parse_MaxQuant: Converting MaxQuant Output file proteinGroups.txt to CLARION...
In wilson: Web-Based Interactive Omics Visualization

Description Usage Arguments Value Author(s)

List with columns of reduced version (see config.json file) If you only want the samples of a specific keyword write: column;exp For example: You got: Intensity Intensity 'experiment_name' Do you want both add "Intensity" to the list. Do you only want the sample add "Intensity;exp" to the list Anything else like 'Intensity;ex' or 'Intensity;' results in writing both. Only works if there are samples of that type. If not, column does not show up in file

parse_MaxQuant(
  proteinGroups_in,
  summary_in,
  outfile,
  outfile_reduced,
  config = system.file("extdata", "parser_MaxQuant_config.json", package = "wilson"),
  delimiter = ";",
  format = NULL,
  version = NULL,
  experiment_id = NULL
)

`proteinGroups_in`	path of proteinGroup.txt file
`summary_in`	path of belonging summary.txt file
`outfile`	path of full CLARION output file
`outfile_reduced`	path of reduced CLARION output file
`config`	path of config file (containing information about metadata)
`delimiter`	delimiter (Default = ;)
`format`	pre-header information about format (optional)
`version`	pre-header information about version (optional)
`experiment_id`	pre-header information about experiment id (optional)