dot-chargeCatchingAA: Cite Charge Catching Amino-Acids

In wrTopDownFrag: Internal Fragment Identification from Top-Down Mass Spectrometry

Cite Charge Catching Amino-Acids

Description

Return a matrix with charge-catching amino-acids and their assumed strength. So far, the strength shown/used is set rather empirically.

Usage

.chargeCatchingAA(
  chargeMode = "pos",
  silent = FALSE,
  debug = FALSE,
  callFrom = NULL
)

Arguments

chargeMode	(character) this value may be 'pos' (default) for the positively charged amino-acids K,R and H or, if this argument has any other value, than all charged amino-acids (K,R,H, S,T,N,Q, D,E, W and Y) will be considered.
silent	(logical) suppress messages
debug	(logical) additional messages and objects exportet to current session for debugging
callFrom	(character) allow easier tracking of messages produced

Value

This function returns a matrix with charge-catching amino-acids and their assumed strength

See Also

fragmentSeq

Examples

.chargeCatchingAA()

wrTopDownFrag documentation built on June 8, 2025, 1:34 p.m.