dot-prefFragPattern: Return data.frame with pattern of perferential fragmentation...
In wrTopDownFrag: Internal Fragment Identification from Top-Down Mass Spectrometry

.prefFragPattern

R Documentation

Return data.frame with pattern of perferential fragmentation sites

Description

Return data.frame with pattern of perferential fragmentation sites Here a simplified version (elaborate see Kelleher group: Haverland 2017, J Am Soc Mass Spectrom)

Usage

.prefFragPattern(silent = FALSE, debug = FALSE, callFrom = NULL)

Arguments

`silent`	(logical) suppress messages
`debug`	(logical) additional messages for debugging
`callFrom`	(character) allow easier tracking of messages produced

Value

This function returns a data.frame with pattern of perferential fragmentation sites

Examples

peTab <- matrix(c("9","13","14","15", "LPVIAGHEAAG","PVIAGHEAAGI","EKKPFSI","KKPFSIE", 
  "P","L","E","E", "I","V","E","E"),nr=4,dimnames=list(NULL,c("no","seq","precAA","tailAA")))
head(.prefFragPattern())

wrTopDownFrag documentation built on June 8, 2025, 1:34 p.m.