zetadiv: Functions to Compute Compositional Turnover Using Zeta Diversity

Share:

Functions to compute compositional turnover using zeta-diversity, the number of species shared by multiple assemblages. The package includes a Zeta.order() function to compute zeta-diversity for a specific number of assemblages, and a Zeta.decline() function to compute zeta-diversity for a range of numbers of assemblages. It also includes additional functions to explain how zeta-diversity varies with distance and with differences of environmental variables between assemblages, using linear regressions and generalized additive models.

Author
Guillaume Latombe, Melodie A. McGeoch, Cang Hui
Date of publication
2015-06-04 12:01:48
Maintainer
Guillaume Latombe <guillaume.latombe@monash.edu>
License
GPL-3
Version
0.1

View on CRAN

Man pages

BCI.env.coarse
Barro Colorado Island 50 Hectare Quadrat Environmental...
BCI.env.fine
Barro Colorado Island 50 Hectare Quadrat Environmental...
BCI.spec.coarse
Barro Colorado Island 50 Hectare Quadrat Species...
BCI.spec.fine
Barro Colorado Island 50 Hectare Quadrat Species...
Marion.env
Marion Island Environmental Dataset
Marion.species
Marion Island Species Presence-Absence Dataset
pie.neg
Pie Chart, considering negative values as zeros
Zeta.ddecay
Zeta distance decay for a specific number of assemblages or...
Zeta.ddecays
Zeta distance decay for a range of numbers of assemblages or...
Zeta.decline
Zeta diversity decline
Zeta.gam
Generalized additive model of zeta for a set of environmental...
Zeta.lm
Linear regression of zeta for a set of environmental...
Zeta.order
Zeta diversity for a specific number of assemblages or sites
Zeta.sam.sensitivity
Sensitivity analysis for the sample size of zeta
Zeta.scale.min.dist
Zeta diversity scaling with sample grain dependency based on...
Zeta.scale.regular
Zeta diversity scaling with sample grain using hierarchically...
Zeta.varpart
Variation partitioning for zeta diversity

Files in this package

zetadiv
zetadiv/NAMESPACE
zetadiv/data
zetadiv/data/Marion.species.RData
zetadiv/data/BCI.spec.fine.RData
zetadiv/data/BCI.spec.coarse.RData
zetadiv/data/BCI.env.coarse.RData
zetadiv/data/Marion.env.RData
zetadiv/data/BCI.env.fine.RData
zetadiv/R
zetadiv/R/functions_package.R
zetadiv/MD5
zetadiv/DESCRIPTION
zetadiv/man
zetadiv/man/BCI.env.coarse.Rd
zetadiv/man/Zeta.sam.sensitivity.Rd
zetadiv/man/Zeta.ddecays.Rd
zetadiv/man/Zeta.scale.regular.Rd
zetadiv/man/Zeta.decline.Rd
zetadiv/man/BCI.spec.fine.Rd
zetadiv/man/Zeta.varpart.Rd
zetadiv/man/BCI.spec.coarse.Rd
zetadiv/man/Marion.env.Rd
zetadiv/man/pie.neg.Rd
zetadiv/man/Zeta.order.Rd
zetadiv/man/Zeta.lm.Rd
zetadiv/man/BCI.env.fine.Rd
zetadiv/man/Marion.species.Rd
zetadiv/man/Zeta.scale.min.dist.Rd
zetadiv/man/Zeta.gam.Rd
zetadiv/man/Zeta.ddecay.Rd