Plot.zeta.ddecay: Zeta distance-decay plotting

In zetadiv: Functions to Compute Compositional Turnover Using Zeta Diversity

Zeta distance-decay plotting

Description

Plots the output of the function Zeta.ddecay.

Usage

Plot.zeta.ddecay(zeta.ddecay)

Arguments

zeta.ddecay

A list produced by the function Zeta.ddecay.

Value

A plot of the zeta distance-decay with distance on the x-axis and the value of zeta on the y-axis.

References

Hui C. & McGeoch M.A. (2014). Zeta diversity as a concept and metric that unifies incidence-based biodiversity patterns. The American Naturalist, 184, 684-694.

See Also

Zeta.decline.mc, Zeta.order.mc, Zeta.decline.ex, Zeta.order.ex, Zeta.ddecay,

Zeta.ddecays

Examples

utils::data(bird.spec.coarse)
xy.bird <- bird.spec.coarse[,1:2]
data.spec.bird <- bird.spec.coarse[,3:193]

dev.new()
zeta.ddecay.bird <- Zeta.ddecay(xy.bird, data.spec.bird, sam = 100, order = 3,
    confint.level = 0.95,plot=FALSE)
Plot.zeta.ddecay(zeta.ddecay.bird)

##########

utils::data(Marion.species)
xy.marion <- Marion.species[,1:2]
data.spec.marion <- Marion.species[,3:33]

zeta.ddecay.marion <- Zeta.ddecay(xy.marion, data.spec.marion, sam = 100, order = 3,
    confint.level = 0.95, trsf = "log", normalize = "Jaccard",plot=FALSE)
dev.new()
Plot.zeta.ddecay(zeta.ddecay.marion)

zetadiv documentation built on June 11, 2022, 1:12 a.m.