zooimage: Analysis of numerical zooplankton images

ZooImage is a free (open source) solution for analyzing digital images of zooplankton. In combination with ImageJ, a free image analysis system, it processes digital images, measures individuals, trains for automatic classification of taxa, and finally, measures zooplankton samples (abundances, total and partial size spectra or biomasses, etc.)

Install the latest version of this package by entering the following in R:
install.packages("zooimage")
AuthorPhilippe Grosjean [aut, cre], Kevin Denis [aut]
Date of publication2014-03-02 13:20:14
MaintainerPhilippe Grosjean <phgrosjean@sciviews.org>
LicenseGPL (>= 2)
Version3.0-5
http://www.sciviews.org/zooimage

View on CRAN

Functions

aboutZI Man page
acquireImg Man page
addClass Man page
addToTest Man page
addToTrain Man page
addVigsToTrain Man page
analyzeClass Man page
calcVars Man page
calib Man page
calibrate Man page
checkDirExists Man page
checkEmptyDir Man page
checkFileExists Man page
checkFirstLine Man page
closeAssistant Man page
closeZooImage Man page
collectTrain Man page
confusion.ZIClass Man page
createThreshold Man page
dropVars Man page
ecd Man page
editDescription Man page
exitZI Man page
exportResults Man page
extensionPattern Man page
focusGraph Man page
focusR Man page
forceDirCreate Man page
getDec Man page
getTest Man page
getTrain Man page
hasExtension Man page
imageViewer Man page
importImg Man page
isZim Man page
jpgList Man page
listFilesExt Man page
listObjects Man page
listSamples Man page
loadObjects Man page
makeClass Man page
makeId Man page
makeTrain Man page
makeZid Man page
modalAssistant Man page
noExtension Man page
optInOutDecimalSep Man page
parseIni Man page
pngList Man page
predict.ZIClass Man page
prepareTest Man page
prepareTrain Man page
print.ZIClass Man page
print.ZIE Man page
print.ZIRes Man page
processImg Man page
processSample Man page
processSampleAll Man page
processSamples Man page
rbind.ZIRes Man page
recode Man page
recode.ZITest Man page
recode.ZITrain Man page
removeObjects Man page
sampleInfo Man page
saveObjects Man page
selectFile Man page
selectGroups Man page
selectList Man page
selectObject Man page
startPgm Man page
summary.ZIClass Man page
template Man page
template.default Man page
trimString Man page
underscoreToSpace Man page
unzipImg Man page
unzipImgAll Man page
viewManual Man page
viewResults Man page
vignettesClass Man page
zicCheck Man page
ZIClass Man page
zidbDatRead Man page
zidbDrawVignette Man page
zidbLink Man page
zidbList Man page
zidbMake Man page
zidbMakeAll Man page
zidbPlotNew Man page
zidbSampleRead Man page
zidbToZid Man page
zidbToZidAll Man page
zidClean Man page
zidCompress Man page
zidCompressAll Man page
zidDatMake Man page
zidDatRead Man page
ZIDlg Man page
zidList Man page
zidToZidb Man page
zidToZidbAll Man page
zidUncompress Man page
zidUncompressAll Man page
zidVerify Man page
zidVerifyAll Man page
ZIE Man page
zieCompile Man page
zieCompileFlowCAM Man page
zieMake Man page
zimCreate Man page
zimDatList Man page
zimDatMakeFlowCAM Man page
zimDatMakeFlowCAMAll Man page
zimEdit Man page
zimExtractAll Man page
zimList Man page
zimMake Man page
zimUpdateAll Man page
zimVerify Man page
zipImg Man page
zipImgAll Man page
zipList Man page
zipNoteAdd Man page
zipNoteGet Man page
zisCreate Man page
zisEdit Man page
zisRead Man page
zooimage Man page
zooimage-package Man page

Files

inst
inst/examples
inst/examples/ScanCol24-example.zip
inst/examples/Description.zis
inst/examples/BIO.2000-05-05.p72.zid
inst/examples/BIO.2000-05-08.p123.zid
inst/templates
inst/templates/default.zim
inst/templates/Description.zis
inst/gui
inst/gui/butBuoy.gif
inst/gui/MenusZIDlgWin.txt
inst/gui/butTools.gif
inst/gui/ZooImage2_64.png
inst/gui/butGraph.gif
inst/gui/butEdit.gif
inst/gui/butCam.gif
inst/gui/ZooImage2.ico
inst/gui/butExport.gif
inst/gui/logo.gif
inst/gui/butCubist.gif
inst/gui/butDirectory.gif
inst/gui/butFilm.gif
inst/gui/butHand2.gif
inst/gui/ToolbarsZIDlgWin.txt
inst/gui/butBluecase.gif
inst/gui/ZooImage2_128.png
inst/gui/butBlueBook.gif
inst/gui/ZooImage.icns
inst/gui/butHand1.gif
inst/gui/butGlasses.gif
inst/gui/Menus.txt
inst/gui/ZooImage.ico
inst/etc
inst/etc/ImportTemplate.zie
inst/etc/Very_detailed.zic
inst/etc/Example.txt
inst/etc/Detailed.zic
inst/etc/Conversion.txt
inst/etc/ZooImageManual.pdf
inst/etc/Basic.zic
inst/etc/Import_Example.zie
NAMESPACE
NEWS
R
R/ZIRes.R R/zis.R R/zic.R R/zim.R R/utilities.R R/zie.R R/zid.R R/fileutils.R R/ZIClass.R R/zip.R R/guiutils.R R/gui.R R/ZITrain.R R/zzz.R R/zidb.R
MD5
DESCRIPTION
man
man/ZIClass.Rd man/zip.Rd man/zie.Rd man/utilities.Rd man/zis.Rd man/ZITrain.Rd man/ZIRes.Rd man/gui.Rd man/zid.Rd man/zidb.Rd man/zic.Rd man/fileutils.Rd man/zim.Rd man/guiutils.Rd man/zooimage.package.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.