zooimage: Analysis of numerical zooplankton images

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ZooImage is a free (open source) solution for analyzing digital images of zooplankton. In combination with ImageJ, a free image analysis system, it processes digital images, measures individuals, trains for automatic classification of taxa, and finally, measures zooplankton samples (abundances, total and partial size spectra or biomasses, etc.)

Author
Philippe Grosjean [aut, cre], Kevin Denis [aut]
Date of publication
2014-03-02 13:20:14
Maintainer
Philippe Grosjean <phgrosjean@sciviews.org>
License
GPL (>= 2)
Version
3.0-5
URLs

View on CRAN

Man pages

fileutils
Various file utility functions used by ZooImage
gui
The ZooImage GUI (Graphical User Interface)
guiutils
Various GUI utility functions used by ZooImage
utilities
Various utility functions used by ZooImage
zic
Check .zic files (ZooImage Categories)
ZIClass
Create and manipulate 'ZIClass' objects
zid
Manage .zid files (ZooImage Data)
zidb
Manage .zidb files (ZooImage Databases)
zie
ZIE (ZooImage Extension) manipulate .zie files to add custom...
zim
Manipulate .zim files (ZooImage Metadata/Measurements)
zip
Zip and unzip raw .tif images for ZooImage and embed metadata
ZIRes
Various function to calculate results ('ZIRes' object)
zis
Manipulate .zis files (ZooImage Samples description)
ZITrain
Manipulate training and testsets 'ZITrain'/'ZITest' objects
zooimage.package
ZooImage: analysis of digital plankton images

Files in this package

zooimage
zooimage/inst
zooimage/inst/examples
zooimage/inst/examples/ScanCol24-example.zip
zooimage/inst/examples/Description.zis
zooimage/inst/examples/BIO.2000-05-05.p72.zid
zooimage/inst/examples/BIO.2000-05-08.p123.zid
zooimage/inst/templates
zooimage/inst/templates/default.zim
zooimage/inst/templates/Description.zis
zooimage/inst/gui
zooimage/inst/gui/butBuoy.gif
zooimage/inst/gui/MenusZIDlgWin.txt
zooimage/inst/gui/butTools.gif
zooimage/inst/gui/ZooImage2_64.png
zooimage/inst/gui/butGraph.gif
zooimage/inst/gui/butEdit.gif
zooimage/inst/gui/butCam.gif
zooimage/inst/gui/ZooImage2.ico
zooimage/inst/gui/butExport.gif
zooimage/inst/gui/logo.gif
zooimage/inst/gui/butCubist.gif
zooimage/inst/gui/butDirectory.gif
zooimage/inst/gui/butFilm.gif
zooimage/inst/gui/butHand2.gif
zooimage/inst/gui/ToolbarsZIDlgWin.txt
zooimage/inst/gui/butBluecase.gif
zooimage/inst/gui/ZooImage2_128.png
zooimage/inst/gui/butBlueBook.gif
zooimage/inst/gui/ZooImage.icns
zooimage/inst/gui/butHand1.gif
zooimage/inst/gui/butGlasses.gif
zooimage/inst/gui/Menus.txt
zooimage/inst/gui/ZooImage.ico
zooimage/inst/etc
zooimage/inst/etc/ImportTemplate.zie
zooimage/inst/etc/Very_detailed.zic
zooimage/inst/etc/Example.txt
zooimage/inst/etc/Detailed.zic
zooimage/inst/etc/Conversion.txt
zooimage/inst/etc/ZooImageManual.pdf
zooimage/inst/etc/Basic.zic
zooimage/inst/etc/Import_Example.zie
zooimage/NAMESPACE
zooimage/NEWS
zooimage/R
zooimage/R/ZIRes.R
zooimage/R/zis.R
zooimage/R/zic.R
zooimage/R/zim.R
zooimage/R/utilities.R
zooimage/R/zie.R
zooimage/R/zid.R
zooimage/R/fileutils.R
zooimage/R/ZIClass.R
zooimage/R/zip.R
zooimage/R/guiutils.R
zooimage/R/gui.R
zooimage/R/ZITrain.R
zooimage/R/zzz.R
zooimage/R/zidb.R
zooimage/MD5
zooimage/DESCRIPTION
zooimage/man
zooimage/man/ZIClass.Rd
zooimage/man/zip.Rd
zooimage/man/zie.Rd
zooimage/man/utilities.Rd
zooimage/man/zis.Rd
zooimage/man/ZITrain.Rd
zooimage/man/ZIRes.Rd
zooimage/man/gui.Rd
zooimage/man/zid.Rd
zooimage/man/zidb.Rd
zooimage/man/zic.Rd
zooimage/man/fileutils.Rd
zooimage/man/zim.Rd
zooimage/man/guiutils.Rd
zooimage/man/zooimage.package.Rd