transX: transX for statTarget inputs

In 13479776/statTarget: Statistical Analysis of Molecular Profiles

Description

transX is to generate statTarget input file formats from Mass Spectrometry Data softwares, such as XCMS, MZmine2,SIEVE and SKYLINE.

Usage

transX(data, type)

Arguments

data	A transX objects. The output file from Mass Spectrometry Data softwares, such as '*.tsv' file from diffreport in XCMS software, '*.csv' file from SIEVE software,'.csv' file from SKYLINE software, '*.csv' file (Export to metaboAnalyst file) from MZmine2 software.
type	The output file formats from Mass Spectrometry Data software, including 'XCMS' or 'xcms','MZmine2' or 'mzmine2','SIEVE' or 'sieve' and 'skyline' or 'SKYLINE'; Read-only .tsv file from diffreport in XCMS software

Value

An output directory named 'statTargetDirectory'

Author(s)

Hemi Luan, [e-mail]

Examples

datpath <- system.file('extdata',package = 'statTarget')
dataXcms <- paste(datpath,'xcmsOutput.tsv', sep='/')
dataSkyline <- paste(datpath,'skylineDemo.csv', sep='/')
transX(dataXcms,'xcms')

13479776/statTarget documentation built on Aug. 14, 2020, 1:58 p.m.