R/datasets.R

In 13thirteen-w/Rpackage_cpSig: Compute 30 signatures similarity between reference and tumor sample

#' Values for 65 Cancer project 
#' 
#' A dataset containing the value for 65 projects that sort out by mSignaturesdb
#' 
#' @docType data
#' @keywords datasets
#' @name mSigsitedb
#' @format A data frame of 32 rows and 65 columns
NULL

#' Values for 28 Cancer project 
#' 
#' A dataset containing the value for 28 projects that sort out by mSignaturesdb
#' 
#' @docType data
#' @keywords datasets
#' @name mSigdb
#' @format A data frame of 32 rows and 73 columns
NULL

#' Values for 2 samples
#' 
#' A dataset containing the clinical data for 2 samples
#' 
#' @docType data
#' @keywords datasets
#' @name sample.clinical
#' @format A data frame of 2 rows and 3 columns
NULL

#' Example input to transMut()
#' 
#' A data frame containing example mutations that can be used as input to transMut()
#' Data comes from two TCGA LUAD patients 
#' 
#' @docType data
#' @keywords datasets
#' @name sample.mut.ref
#' @format A data frame of 657 rows and 5 columns
NULL

#' Values for 2 randomly generated tumor samples
#' Example input to sigSim()
#' 
#' A dataset containing the value for the 96-trinucleotide contexts of 100 tumors
#' 
#' @docType data
#' @keywords datasets
#' @name sample.mut.trans
#' @format A data frame of 2 rows and 96 columns
NULL