Gillespie.Likelihood.MCMC: Gillespie MCMC

In 2019020826/SDSMCMC: tools::toTitleCase("SDS Epidemic")

Description

This function generates posterior samples of beta, gamma, and rho using MCMC based on Examce likelihood in subsection 4.1 This code refers Eq. (2.1) in Choi and Rempala (2012)

Usage

Gillespie.Likelihood.MCMC(indata, nrepeat, prior.a, prior.b)

Arguments

indata	input data set. SIR trajectory data set
nrepeat	number of iteration of MCMC
prior.a	hyper shape parameter of gamma prior for beta, gamma
prior.b	hyper rate parameter of gamma prior for beta, gamma

Value

returning posterior sample of beta and gamma

2019020826/SDSMCMC documentation built on March 2, 2020, 5:31 a.m.