SIR.ODE: SDS MCMC

In 2019020826/SDSMCMC: tools::toTitleCase("SDS Epidemic")

Description

These functions are to draw posterior samples using MCMC for SDS likelihood in subsection 4.2 and Algorithm 5.1 This function solves the ODE in Eq. (2.7) and step 3 in Algorithm 5.1

Usage

SIR.ODE(indata = ti, Tmax = T.max, dt = 0.01, beta, gamma, ic)

Arguments

indata	descrete time of an individual. This values are came from Sellke epidemic data
Tmax	cutoff time of epidemic
dt	time increment of ODE
beta	present values of beta at the present step at MCMC
gamma	present values of gamma at the present step at MCMC
ic	initial values of ODE set to c(1.0, rho, 0.0), rho set the present values of beta and gamma at the present step at MCMC

2019020826/SDSMCMC documentation built on March 2, 2020, 5:31 a.m.