Generalized Renown Analysis of Molecular variance for Mixed model Analysis R package
library(devtools) install_github("2eding/GAMMAR") library(GAMMAR)
X <- as.matrix(data.table::fread("X_rightdim.txt")) Y <- as.matrix(data.table::fread("Y_rightdim.txt")) data.table::fread <= This package is useful for input large data X_rightdim.txt is snp data * Y_rightdim.txt is gene expression data
K <- Kinship(X)
VC <- varComp(K, Y, X)
run <- run_grammar(K, Y, X, VC, max_itr = 4, num.parallel = 4, outPath = "./test/", outName = "result.txt")
http://doi.org/10.5391/IJFIS.2020.20.3.1
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