varComp: varComp

In 2eding/GRAMMAR: Generalized Renown Analysis of Molecular variance for Mixed model Analysis R package (GRAMMAR)

varComp

Description

varComp function will estimate variance components

Usage

varComp(K, Y, X)

Arguments

K	is obtained from the Kinship function
Y	is the phenotype matrix, individual x phenotypes
X	is the SNP matrix, individual x SNPs

Value

Variance components Vg: genetic factor Ve: environment factor

Examples

   X <- as.matrix(read.table("./testData/X_rightdim.txt"))
   Y <- as.matrix(read.table("./testData/Y_rightdim.txt"))
   K <- Kinship(X)
   
   VC <- varComp(K, Y, X)

2eding/GRAMMAR documentation built on Jan. 18, 2024, 6 a.m.