diffT: Compute diffT score between two TAD calls
In 3DGenomes/TADpole: Call hierarchical TADs
Description
Usage
Arguments
Examples
Description
Compute diffT score between two TAD calls
Usage
1
diffT(bed_x, bed_y)
Arguments
'bed_x, bed_y'
two 'data.frame's with a BED-like format with 3 columns: chromosome, start and end coordinates of each TAD, in bins.
Examples
1
2
3
control <- read.table(system.file("extdata", "control.bed", package = "TADpole"))
case <- read.table(system.file("extdata", "case.bed", package = "TADpole"))
difft_control_case <- diffT(control, case)
3DGenomes/TADpole documentation built on Jan. 30, 2020, 8:17 p.m.
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Description Usage Arguments Examples
Description
Compute diffT score between two TAD calls
Usage
1 | diffT(bed_x, bed_y)
|
Arguments
'bed_x, bed_y' |
two 'data.frame's with a BED-like format with 3 columns: chromosome, start and end coordinates of each TAD, in bins. |
Examples
1 2 3 | control <- read.table(system.file("extdata", "control.bed", package = "TADpole"))
case <- read.table(system.file("extdata", "case.bed", package = "TADpole"))
difft_control_case <- diffT(control, case)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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