random_bed: Compute a random set of TAD border coordinates from a sample...
In 3DGenomes/TADpole: Call hierarchical TADs
Description
Usage
Arguments
Examples
Description
Compute a random set of TAD border coordinates from a sample partition
Usage
1
random_bed(bed, bad_columns = NULL)
Arguments
'bed'
a 'data.frame' with a BED-like format with 3 columns: chromosome, start and end coordinates of each TAD, in bins.
'bad_columns'
a numeric 'vector' with the positions of the bad columns. TAD borders will not be placed on bad columns. Default value of 'NULL' means no bad columns will be introduced.
Examples
1
2
control <- read.table(system.file("extdata", "control.bed", package = "TADpole"))
random_coords <- random_bed(control)
3DGenomes/TADpole documentation built on Jan. 30, 2020, 8:17 p.m.
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Description Usage Arguments Examples
Description
Compute a random set of TAD border coordinates from a sample partition
Usage
1 | random_bed(bed, bad_columns = NULL)
|
Arguments
'bed' |
a 'data.frame' with a BED-like format with 3 columns: chromosome, start and end coordinates of each TAD, in bins. |
'bad_columns' |
a numeric 'vector' with the positions of the bad columns. TAD borders will not be placed on bad columns. Default value of 'NULL' means no bad columns will be introduced. |
Examples
1 2 | control <- read.table(system.file("extdata", "control.bed", package = "TADpole"))
random_coords <- random_bed(control)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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