Man pages for ABMI/ICARUSviewer

agegenderpieplotcode for plotting age-gender pie plot
agepieplotcode for plotting age pie plot
AUROCcurveget AUROC curve From PatientLevelPrediction
baseline_comorbidityready for calculate co-prevalence and RR
baseline_drugready for calculate co-prevalence and RR
baselineMeasure_comparecomparing measurement value between two cohorts
baselineMeasure_pvaluefunction for calculate p-value of measurement values
baselineMeasure_summaryfunction for calculate mean or median of measurement values
bmitreeplotcode for plotting bmi tree plot
calculateRRready for calculate Relative Ratio and CI
call_dataListcode for loading data
call_eventclinical Event data were extracted
characteristic_pvalueanalysis of demographic characteristics : if the value has...
characteristic_summaryanalysis of demographic characteristics; if the value has...
charactManufactureanalysis of demographic characteristics according to disease...
charterstic_manufacturecollect and mutate demographic characteristics
check.packagescheck and ready packages needed
co_prevtablecalculate co-prevalence rate
demographic_calcalculate p-value of gender(chi-square test) and and age...
demographic_Tabletable output of bmi and gender proportion
drugTableready for calculate co-prevalence and RR
eventFreeSurvivalget measurement baseline measurement data
event_incidencecombine and calculate incidence rate of clinical event
genderpieplotcode for plotting gender Pie plot
getAllLongitudinalextract longitudinal analysis using FeatureExtraction
getBaselineCovariateget measurement baseline measurement data
getConditionCovariateready for plotting comorbidity data
getDrugCovariateAnalysis of baseline medication use of cohorts
getLongitudinalsubsetting features that have specific measurement_concept_id
getPlpDataListcreate Plp data and population data (ready for run Plp)
helloHello, World!
insertCohortcode for insert cohort at result table
latent_class_classificationusing latent class linear mixed model (LCMM), create groups...
latent_longitudinal_plottrajectory plot clustered by lcmm
latent_longitudinal_tabletrajectory table clustered by lcmm
lme_logitudinaluse linear mixed model regression, find regression line and...
longitudinalaggregate total code for longitudinal analysis
plot_event_rateplot for clinical event rate
plotLmmplot trajectory line and its CI
plotPredictiveVariablesranking top n predictive variables and draw plot
pvalueCalAmongMoreThanTwocalculate pvalue among more than two cohorts
pvalueCalBetweenTwocalculate pvalue between two cohorts : if the value has...
removeTempAndOutputremove setting
RRplotplot risk ratio and its CIs
RunPlpRun Plp
settingSetting some list or dataframe (diseaseList for comorbidity...
sql_readercode for reading query and calling the data (using SqlRender)
switchcohortswitch input from label to cohortDefinitionId
switchselect_modelswitch input from label to machine learning model
switchselect_pftswitch input from label to cohortDefinitionId
switchselect_plpswitch input from label to cohortDefinitionId for plp
tableLmmtable for representative estimated profile trajectory and its...
tablePredictiveVariablesranking top n predictive variables and conceptName
ABMI/ICARUSviewer documentation built on Feb. 12, 2020, 4:12 a.m.