ReadSetObjTables: Read in polylink data.

In ACAD-UofA/PolyLinkR: Polygenic Pathway Enrichment Accounting for Genetic Linkage

Description

Reads in data. Optionally, can merge gene sets that share more than a specified proportion of genes, or remove gene sets with less/more than a specified number of genes.

Usage

ReadSetObjTables(
  in.path = "./",
  population = NA,
  minsetsize = 10,
  maxsetsize = 1000,
  merge.set.prop = 1,
  n.cores = NA
)

Arguments

in.path	character: pathway to input files
population	character: label used to identify input files. Three input files are required, specified by 'setInfo', 'setObj', and 'objInfo'.
minsetsize	integer: minimum number of genes required in gene set
maxsetsize	integer: maximum number of genes required in gene set
n.cores	integer: number of cores to run in parallel
min.sim	double: sets sharing at least this proportion of genes will be merged

Value

Returns a list with three elements.

ACAD-UofA/PolyLinkR documentation built on Dec. 31, 2020, 9:44 a.m.