requireBrainarray: Installs brainarray CDF and probe information packages

In AEBilgrau/DLBCLdata: Automated and reproducible download and preprocessing of DLBCL data

Description

This package downloads, installs, and/or loads the brainarray CDF and probe enviroments from the Brainarray website.

Usage

requireBrainarray(array_type, custom_cdf = "enst",
  version = getLatestVersion())

Arguments

array_type	A character of length 1 giving the giving the name of the' array. (Preferably as returned by affyio::read.celfile.header)
custom_cdf	A charcter giving the annotation type.
version	A character of length 1 giving the version to download.

Value

Invisibly returns a list of the locations of the saved files.

Author(s)

Steffen Falgreen, Anders Ellern Bilgrau

References

See http://brainarray.mbni.med.umich.edu.

See Also

tempdir, install.packages

Examples

tmp.path <- requireBrainarray("hgu133a", custom_cdf = "enst",
                              version = "18.0.0")
print(tmp.path)
tmp.path2 <- requireBrainarray("hgu133a", custom_cdf = "enst")
print(tmp.path2)

AEBilgrau/DLBCLdata documentation built on May 5, 2019, 11:29 a.m.