readDACData: Read DLBCL class files

In AEBilgrau/DLBCLdata: Automated and reproducible download and preprocessing of DLBCL data

Description

Functions to read the internal data files of classified CEL files using the DLBCL Automatic Classifier (DAC) [1]. These were manually supplied to the DAC Windows interface.

Usage

readDACData(geo_nbr)

Arguments

geo_nbr

A character string giving the GSE number.

Value

A data.frame of the predicted classes and the class probabilities. Returns NULL if geo_nbr is not found.

Note

The GSE11318 dataset was not classified using the DAC.

Author(s)

Anders Ellern Bilgrau
Steffen Falgreen

References

[1] Care, M. A., Barrans, S., Worrillow, L., Jack, A., Westhead, D. R., & Tooze, R. M. (2013). A microarray platform-independent classification tool for cell of origin class allows comparative analysis of gene expression in diffuse large B-cell lymphoma. PloS One, 8(2), e55895. doi:10.1371/journal.pone.0055895

Examples

head(DLBCL_overview[, -c(3,4,6)])

head(readDACData("GSE19246"))

readDACData("UNSUPPORTED_STUDY")

AEBilgrau/DLBCLdata documentation built on May 5, 2019, 11:29 a.m.