HexTemplate: Create a HexTemplate Object
In AG-ESSER/HexTemplatesFCS: Analysis Of Flow Cytometry Data Using Hexagon Binning

Description Usage Arguments Value Examples

Create a HexTemplate Object

HexTemplate(
  flowset,
  xChannel,
  yChannel,
  xbins = 20,
  metadata = data.frame(),
  trans_fun = log10
)

`flowset`	A flowCore `flowSet`
`xChannel`	A string representing the x-axis channel
`yChannel`	A string representing the y-axis channel
`xbins`	Number of hexagons on the x-axis - 1
`metadata`	A data.frame containing metadata. Column names should be the group names.
`trans_fun`	A function to transform the data. Standard is `log10`. `return` if data should not be transformed.

A HexTemplate

#get example fcs
#get example metadata
#show available channels
colnames(fcs)
hexT <- HexTemplate(flowset = fcs, xChannel = "SSC-H", yChannel = "DAPI-H", metadata)