detectGates: Automatically detect Gates based on the t-scores

Description Usage Arguments Value

View source: R/detectGates.R

Description

Automatically detect Gates based on the t-scores

Usage

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detectGates(
  template,
  ts,
  thresh = 5,
  minT = 1,
  tryO = 10,
  nM = 2,
  conc = 3.5,
  tSeed = NA
)

Arguments

template

A HexTemplate Object

ts

A vector of t-scores

thresh

A threshold that indicates neighboring hexagons might belong to the same region of interest (gate)

minT

A minimum t-score so that a hexagon with this score is regarded as a valid entry point

tryO

An integer that determines how many times should be looked for the best configuration

nM

An integer specifying what is considered a neighbor

Value

A list of coordinates


AG-ESSER/HexTemplatesFCS documentation built on Dec. 31, 2020, 9:44 a.m.