crossTabGOIDsUnrestricted | R Documentation |
This function performs a crosstabulation between two lists of enriched GOTerms The lists are intended to have been obtained from enrichment analyses performed on two gene lists
crossTabGOIDsUnrestricted(GO1, GO2, onto, GOLevel, listNames = NULL)
GO1 |
character vector containing a FIRST list of GO identifiers |
GO2 |
character vector containing a SECOND gene list GO identifiers |
onto |
string describing the ontology. Belongs to c('BP', 'MF', 'CC', 'ANY') |
listNames |
character vector with names of the genelists that generated the enriched GOIDs |
GOLev |
An integer |
data(kidneyEnrichedGOIDs) GOIDs1 <-kidneyEnrichedGOIDs[[1]] GOIDs2 <-kidneyEnrichedGOIDs[[2]] names4lists<- names(kidneyEnrichedGOIDs)[1:2] anOnto <- 'BP' GOLev<- 3 crossTabbedGOIds <- crossTabGOIDsUnrestricted (GO1 = GOIDs1, GO2 = GOIDs2, onto = anOnto, GOLevel =GOLev, listNames=names4lists)
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