stdTest4GOIDs | R Documentation |
This function performs a "standard test" of equivalence between two lists of enriched GOTerms The lists are intended to have been obtained from enrichment analyses performed on two gene lists Given that this version of the test does not provide gene lists only "unrestricted" crosstabulation can be performed That is, all terms in the given GO level are used to build the table, even if they are not found in the geneLists's annotations.
stdTest4GOIDs(GO1, GO2, onto, GOLevel, listNames = NULL)
GO1 |
character vector containing a FIRST list of GO identifiers |
GO2 |
character vector containing a SECOND gene list GO identifiers |
onto |
string describing the ontology. Belongs to c('BP', 'MF', 'CC', 'ANY') |
listNames |
character vector with names of the genelists that generated the enriched GOIDs |
GOLev |
An integer |
GOIDs2 <-kidneyEnrichedGOIDs[[2]] data(kidneyEnrichedGOIDs) GOIDs1 <-kidneyEnrichedGOIDs[[1]] names4lists<- names(kidneyEnrichedGOIDs)[1:2] anOnto <- 'BP' GOLev<- 3 testedFromGOIds <- stdTest4GOIDs (GO1 = GOIDs1, GO2 = GOIDs2, onto = anOnto, GOLevel =GOLev, listNames=names4lists)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.