nmf.responsible.genes: A Function to find responsible genes for variation within a...

Description Usage Arguments Examples

View source: R/nmf.responsible.genes.R

Description

This function allows you to find the likely genes responsible for affecting a variable, typically the presence or absence of a disease

Usage

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nmf.responsible.genes(H.matrix, W.matrix, variable, number.genes, gene.names,
  gene.expressions, control.age = T, age = NA)

Arguments

H.matrix

The H.matrix of an NMF factorisation of a gene expression dataset

W.matrix

The W.matrix of an NMF factorisation of a gene expression dataset

variable

The discrete variable or disease to be investigated

number.genes

The number of likely genes to find

gene.names

A character/string vector containing the list of gene names

gene.expressions

The initial gene expression matrix, with genes labelled by row names

Examples

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ASharmaML/nmf-gene documentation built on May 14, 2019, 8:57 a.m.