filterLowExprGenes: Low Count Genes Filter

In AbhishekSinha28/tgcapkg: TGCA Data Analysis

Low Count Genes Filter

Description

This function is a part of the data wrangling functionality of tcgaCleaneR. It allows user to input the SummarizedExperiment S4 class Cancer Dataset (e.g. TCGA dataset) and the threshold for the minimum gene count and sample count.

Usage

filterLowExprGenes(data, gene_count, sample_size)

Arguments

data	SummarizedExperiment S4 class Dataset. E.g. TCGA Dataset.
gene_count	numeric: gene count threshold
sample_size	numeric: sample size threshold

Value

S4 data object

Examples

filterLowExprGenes(data=brca.data,gene_count = 20,sample_size = 200)

AbhishekSinha28/tgcapkg documentation built on May 3, 2022, 7:40 a.m.