README.md

In Acribbs/scAmpDesign:

scAmpDesign

The goal of scAmpDesign is to design primers for single-cell sequencing.

Installation

You can install the released version of scAmpDesign from GitHub with:

# install.packages("devtools")
devtools::install_github("Acribbs/scAmpDesign")

Example

This is a basic example which shows you how scAmpDesign should be used:

library(scAmpDesign)
single_primer_design(ncbi="NC_045512", primer3="/Users/adamcribbs/miniconda3/bin/primer3_core")
#> [1] "Looks like there may be a problem, did you specify a real NCBI reference?\n                                                       Otherwise GenBank may be down"
#> [1] "Looks like there may be a problem, did you specify a real Ensembl reference?\n                                                     Otherwise the server may be down. If an output is produced please ignore this warning"

Acribbs/scAmpDesign documentation built on May 26, 2020, 9:56 p.m.