GetIMPath: Quick image name finding
In Ahlallan/MetaxpR: MetaxpR

Description Usage Arguments Value Author(s) See Also Examples

View source: R/GetIMPath.R

Get MX image name(s) given its coordinates

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GetIMPath(SERVER = "MDCStore", ID = "moldev", PWD = "moldev",
  PlateID, WellID, SiteID, TimePoint = 1, Z = 1, Unix.diff = c("//",
  "/media/"))

`SERVER`	the odbc connexion to MDCStore database
`ID`	the identifiant for connexion
`PWD`	the password for connexion
`PlateID`	the Plate Identifier
`WellID`	the Well Identifier
`SiteID`	a vector of 2 integers showing x and y site positions. If only one site present, x and y equal 0
`TimePoint`	From what timepoint the image name should be returned. Default is 1.
`Z`	The Z position of the image. Default is 1, value if no stacks is recorded. 0 for max projection, if recorded
`Unix.diff`	the string replacement for the mounting point of UNC image location, when accessed from linux machine

A string array containing full image names

Allan Sauvat, allan.sauvat@gustaveroussy.fr

GetMDCInfo

#Not running
DB = GetMDCInfo(SERVER = 'MDCStore',ID = 'sa', PWD = '***') 
UniqueIDs=DB$MeasurementID[grep(paste0(1500:1515,collapse='|'),DB$PlateID)]) #Get uniquesIDs from plate 1500 to 1515
MyData = lapply(UniqueIDs,function(x)GetMDCData(SERVER='YODA-SERVER',MeasurementID=x)) #Create a list that contains cellular data from each plate