GetMDCData: Cell-by-Cell data Query

Description Usage Arguments Value Author(s) See Also Examples

View source: R/GetMDCData.R

Description

Get Cell-by-Cell segmentation data stored in MDCStore database given uniqueID

Usage

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GetMDCData(SERVER = "MDCStore", ID = "moldev", PWD = "moldev",
  MeasurementID, getsite = T, TimeCourse = F)

Arguments

SERVER

the odbc connexion to MDCStore database

ID

the identifiant for connexion

PWD

the password for connexion

MeasurementID

the uniqueID created by MetaXpress/PowerCore segmentation

getsite

Shall siteID be added to data set ?

TimeCourse

Is it a timecourse experiment?

Value

A data.frame with cell-by-cell data stemming from MetaXpress/PowerCore segmentation

Author(s)

Allan Sauvat, [email protected]

See Also

GetMDCInfo

Examples

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#Not running
DB = GetMDCInfo(SERVER = 'MDCStore',ID = 'sa', PWD = '***') 
UniqueIDs=DB$MeasurementID[grep(paste0(1500:1515,collapse='|'),DB$PlateID)]) #Get uniquesIDs from plate 1500 to 1515
MyData = lapply(UniqueIDs,function(x)GetMDCData(SERVER='YODA-SERVER',MeasurementID=x)) #Create a list that contains cellular data from each plate

Ahlallan/MetaxpR documentation built on Aug. 11, 2018, 7:59 a.m.