GetMDCData: Cell-by-Cell data Query

In Ahlallan/MetaxpR: MetaxpR

Cell-by-Cell data Query

Description

Get Cell-by-Cell segmentation data stored in MDCStore database given uniqueID

Usage

GetMDCData(
  SERVER = "MDCStore",
  ID = "moldev",
  PWD = "moldev",
  MeasurementID,
  getsite = T,
  TimeCourse = F
)

Arguments

SERVER	the odbc connexion to MDCStore database
ID	the identifiant for connexion
PWD	the password for connexion
MeasurementID	the uniqueID created by MetaXpress/PowerCore segmentation
getsite	Shall siteID be added to data set ?
TimeCourse	Is it a timecourse experiment?

Value

A data.frame with cell-by-cell data stemming from MetaXpress/PowerCore segmentation

Author(s)

Allan Sauvat, [e-mail]

See Also

GetMDCInfo

Examples

#Not running
DB = GetMDCInfo(SERVER = 'MDCStore',ID = 'sa', PWD = '***') 
UniqueIDs=DB$MeasurementID[grep(paste0(1500:1515,collapse='|'),DB$PlateID)]) #Get uniquesIDs from plate 1500 to 1515
MyData = lapply(UniqueIDs,function(x)GetMDCData(SERVER='YODA-SERVER',MeasurementID=x)) #Create a list that contains cellular data from each plate

Ahlallan/MetaxpR documentation built on July 9, 2023, 1:59 p.m.