Man pages for AleMorales/SeedSorter
Supervised classification of seeds from flow cytometry
| classifySeeds | Use a trained model to predict to classify a sample into... |
| cleanTrainingSample | Use k-means clustering to separate waste from seeds using a... |
| compareAlgorithms | Compare performance of several algorithms on the same data,... |
| compareEnsemble | Compare performance of several ensembles on the same data,... |
| createTrainingTask | Create classification task from a dataset |
| generateIndices | Generate indices for combinations of tasks |
| getPredictionData | Read and process seed sample to be classified |
| getTrainingData | Read and process seed sample (with optional complementary... |
| mergeComparisons | Merge results of multiple calls to 'compareAlgorithms' |
| plotComparison | Generate a boxplot with the performance score of the... |
| processFile | Process a file with particle profiles and save a new file... |
| processFiles | Process files with particle profiles in a given folder |
| readData | Read the data associated to a sorted sample |
| testModel | Test a trained model with labelled data. |
| trainAlgorithm | Train a learning algorithm and return the resulting model. |
| trainEnsemble | Train a stacked ensemble of learning algorithms and return... |
| tuneAlgorithm | Train an algorithm while tuning its hyperparameters and... |
| tuneEnsemble | Train a stacked ensemble of algorithms while tuning its... |
