bayesnowcasting: Correct incidence data with notification delay (nowcasting).
In AlertaDengue/AlertTools: utility functions for the Infodengue Alert System

View source: R/adjust_incidence_functions.R

bayesnowcasting

R Documentation

Correct incidence data with notification delay (nowcasting).

Description

This function estimate the Bayesian nowcast (new version)

Usage

bayesnowcasting(d, Dmax = 10, nowSE, nweeks = 50, interacao = FALSE, tweet = F)

Arguments

`Dmax`	for the "bayesian" method. Maximum number of weeks that is nowcasted
`nowSE`	week of the nowcasting (ex. 202110).
`nweeks`	number of weeks used for model calibration, default is 50.
`interacao`	TRUE (default) to include in the model the delay-time interaction term
`tweet`	FALSE (default). TRUE to include tweet in the model
`obj`	data.frame with individual cases, containing columns municipio_geocodigo, dt_notific, dt_sin_pri, dt_digita

Value

data.frame with median and 95percent confidence interval for the predicted cases-to-be-notified)

Examples

dados <- getdelaydata(cities=3304557, nyears=1, cid10="A90", 
lastday = as.Date("2024-03-23"), datasource=con)  # Not run without connection
resfitcIsT<-bayesnowcasting(dados, nowSE = 202412)

AlertaDengue/AlertTools documentation built on Nov. 27, 2024, 11:55 p.m.