read.cases: Function to extract case count for covered municipalities

In AlertaDengue/AlertTools: utility functions for the Infodengue Alert System

Function to extract case count for covered municipalities

Description

Function read.cases extract notification data from database and aggregate by epiweek. Used by mem.

Usage

read.cases(start_year, end_year, cid10 = "A90", datasource = con, mun_list)

Arguments

start_year	first year of the time series
end_year	last year of the time series
cid10	cid 10 code. Dengue = "A90" (default), Chik = "A92.0", Zika = "A92.8"
datasource	Infodengue connection
mun_list	vector with the municipalities' 7 digit geocodes

Author(s)

Marcelo F C Gomes

Examples

dd <- read.cases(2019, 2020, mun_list = c(4108304, 3300936))
dd <- read.cases(2019, 2020, cid10 = "A92.0", mun_list = c(4108304, 3300936))

AlertaDengue/AlertTools documentation built on Nov. 27, 2024, 11:55 p.m.