Man pages for AlexWeinreb/wbData
Download And Use WormBase Data
| get_dir_cache | Determine cache directory |
| get_filename | Find the filename and FTP path |
| get_filename_cgc | Get URL of CGC strain list |
| get_filename_geneID | Get FTP path and filename of the geneIDs table |
| get_filename_genome | Get FTP path and filename of the genome FASTA file |
| get_filename_gtf | Get FTP path and filename of the GTF file |
| get_filename_transcriptome | Get FTP path and filename of the transcriptome FASTA file |
| get_filename_txdb | Get filename for a TxDb file |
| get_WS | Validate Wormbase release number. |
| guess_WS_from_date | Guess Wormbase release from date |
| s2i | Convert between gene symbol, Wormbase ID, and sequence name |
| wb_clean_cache | Clean wbData cache directory. |
| wb_clean_gene_names | Clean up old gene names |
| wb_get_gene_name_history | Load the gene name history |
| wb_get_genome_path | Get path to cached genome file |
| wb_get_gtf_path | Get path to cached GTF file |
| wb_get_transcriptome_path | Get path to cached transcriptome file |
| wb_load_cgc_list | Load the list of strains available at the CGC |
| wb_load_exon_coords | Load exon coordinates |
| wb_load_gene_coords | Load gene coordinates |
| wb_load_gene_ids | Load Wormbase Gene ID table |
| wb_load_tx2gene | Load transcript to gene correspondence table |
| wb_load_TxDb | Load TxDb |
| wb_tx2g | Convert between transcript ID and gene ID |
