wb_load_gene_ids: Load Wormbase Gene ID table

In AlexWeinreb/wbData: Download And Use WormBase Data

Load Wormbase Gene ID table

Description

Load a geneIDs table. This gives the correspondence between gene symbol (e.g. unc-10), Wormbase ID (e.g. WBGene00006750) and the sequence name (e.g. T10A3.1). If the required geneIDs table is not cached, it is first downloaded.

Usage

wb_load_gene_ids(WS, dir_cache = NULL)

Arguments

WS	Wormbase release version (e.g. WS277).
dir_cache	Directory where the downloaded files are cached.

Value

A tibble obtained from reading the Wormbase table.

Examples

gids <- wb_load_gene_ids(277)
s2i("unc-10", gids)

AlexWeinreb/wbData documentation built on April 3, 2025, 1:24 p.m.