Files in AliSaei/HiCSuite
Genome Scaffolding using Hi-C data
.Rbuildignore
.gitignore
DESCRIPTION
HiCSuite.Rproj
LICENSE
NAMESPACE
R/ICE.R
R/helpers.R
R/join_maps.R
R/join_maps_plus.R
R/run_scaffoldR.R
README.md
data/bilberry_sequence_len.csv
data/bilbery_contact_10kb.rds
data/billberry_interseq_Links_EdgeSize200000.csv
data/unknown_2chrs_contact_20k.rds
data/unknown_sequence_len.csv
inst/rmd/read_alignment.md
inst/scripts/CreateScaffoldedFasta.pl
inst/scripts/PreprocessSAMs.pl
inst/scripts/PreprocessSAMs.sh
inst/scripts/bam_to_bins.awk
inst/scripts/filter_reads.awk
inst/shiny-apps/scaffoldR/globals/functions.R
inst/shiny-apps/scaffoldR/globals/helpers.R
inst/shiny-apps/scaffoldR/globals/input_ui.R
inst/shiny-apps/scaffoldR/globals/scaf_ui.R
inst/shiny-apps/scaffoldR/server.R
inst/shiny-apps/scaffoldR/ui.R
inst/shiny-apps/scaffoldR/www/ajax-loader.gif
inst/shiny-apps/scaffoldR/www/jscript.js
inst/shiny-apps/scaffoldR/www/logo.png
