inst/shiny-apps/scaffoldR/globals/input_ui.R
In AliSaei/HiCSuite: Genome Scaffolding using Hi-C data
shinyUI(
fluidPage(style = "font-family: Tahoma;",
div(style = "position: fixed; height: 100%; background: #ece9df; padding: 10px; width: 250px; border-right: 1px solid #E8E8E8; font-family: Tahoma; font-size: 12px;",
fluidRow(style = "margin: 10px 0 0 0;",
tags$button(id = "dtInput", class = "btn btn-default btn-md btn-accordion",
list(NULL, label = "Data Input"),
htmltools::tags$span(class = "glyphicon glyphicon-triangle-bottom")
),
div(style = "border: 1px solid #E8E8E8; border-radius: 3px; padding: 2px; background-color: white; margin-bottom: 10px;",
div(id = "DataInput", style = "padding: 10px;",
radioGroupButtons("mapSrc", "Contact data:", choices = c("Local", "Remote"), selected = "Local",
justified = TRUE, size = "xs", status = "gray",
checkIcon = list(
yes = tags$i(class = "fa fa-circle",
style = "color: black"),
no = tags$i(class = "fa fa-circle-o",
style = "color: white"))),
div(style = "margin-top: -13px;",
conditionalPanel(
condition = "input.mapSrc == 'Local'",
#shiny::fileInput("contactMap", NULL, accept = c("csv", ".txt", ".rds"), width = '100%'),
textInput("directory", "Data Directory"),
#shinyFiles::shinyDirButton('directory', label='Set Data Directory',
# title='Please select a folder',
# class = "btn-dir", icon = icon("folder-open")),
#verbatimTextOutput("dirPath"),
div(style = "margin-top: 0px;",
pickerInput("mapFile", NULL, choices = NULL , multiple = FALSE,
options = list(style = "btn-default btn-md btn-picker", size = 20,
`live-search` = TRUE, tickIcon = "glyphicon-ok",
width = "100%", showTick = TRUE)
)
)
)
),
div(
shinyWidgets::prettySwitch("loadSeqLen", strong("Sequence lengths (optional)"), status = "success")
),
conditionalPanel(
condition = "input.loadSeqLen != 0",
div(style = "margin-top: -10px;",
radioGroupButtons("lenSrc", NULL, choices = c("Local", "Remote"),
selected = "Local", justified = TRUE, size = "xs", status = "gray",
checkIcon = list(
yes = tags$i(class = "fa fa-circle",
style = "color: black"),
no = tags$i(class = "fa fa-circle-o",
style = "color: white"))),
div(style = "margin-top: -13px;",
conditionalPanel(
condition = "input.lenSrc == 'Local'",
#shiny::fileInput("lenFile", NULL, accept = c("csv", ".txt"), width = '100%'),
div(style = "margin-top: 0px;",
pickerInput("lenFile", NULL, choices = NULL , multiple = FALSE,
options = list(style = "btn-default btn-md btn-picker", size = 20,
`live-search` = TRUE, tickIcon = "glyphicon-ok",
width = "100%",showTick = TRUE)
)
)
)
)
)
),
div(style = "margin-top: 0px;",
withBusyIndicatorUI(
actionButton("import_data", "Import Data", class = "btn-action",
icon = icon('import', lib = "glyphicon"))
)
),
div(style = "margin-top: 15px;",
numericInput("binsize2", "Bin size (bp):", value = 1, min = 0, max = 500000, step= 10000),
div(style = "margin-top: -13px;",
sliderInput("binsize", NULL, min = 0, value = 0, max = 0, width = '100%', ticks = TRUE)
),
div(style = "margin-top: -30px;",
withBusyIndicatorUI(
actionButton("updateBinning", "Update", class = "btn-update",
icon = icon('play', lib = "glyphicon"))
)
),
conditionalPanel(
condition = "input.updateBinning",
withBusyIndicatorUI(
actionButton("saveBinData1", "Save changes to disk", width = '100%', class = "dbutt",
icon = icon("floppy-disk", lib = "glyphicon")
)
)
)
)
)
),
tags$button(id = "faInput", class = "btn btn-default btn-md btn-accordion",
list(NULL, label = "Assembly Input (Optional)"),
htmltools::tags$span(class = "glyphicon glyphicon-triangle-bottom")
),
div(style = "border: 1px solid #E8E8E8; border-radius: 3px; padding: 2px; background-color: white; margin-bottom: 10px;",
div(id = "FAInput", style = "padding: 10px; display: none;",
radioGroupButtons("faSrc", "FASTA file:", choices = c("Local", "Remote"), selected = "Local",
justified = TRUE, size = "xs", status = "gray",
checkIcon = list(
yes = tags$i(class = "fa fa-circle",
style = "color: black"),
no = tags$i(class = "fa fa-circle-o",
style = "color: white"))),
div(style = "margin-top: -13px;",
conditionalPanel(
condition = "input.faSrc == 'Local'",
#shiny::fileInput("contactMap", NULL, accept = c("csv", ".txt", ".rds"), width = '100%'),
#shinyFiles::shinyDirButton('directory', label='Set Data Directory',
# title='Please select a folder',
# class = "btn-dir", icon = icon("folder-open")),
#verbatimTextOutput("dirPath"),
div(style = "margin-top: 0px;",
pickerInput("faFile", NULL, choices = NULL , multiple = FALSE,
options = list(style = "btn-default btn-md btn-picker", size = 20,
`live-search` = TRUE, tickIcon = "glyphicon-ok",
width = "100%",showTick = TRUE)
)
),
),
conditionalPanel(
condition = "input.faSrc == 'Remote'",
selectizeInput("faSrc", NULL, choices = "DropBox")
)
),
div(style = "margin-top: 0px;",
withBusyIndicatorUI(
actionButton("import_fasta", "Import FASTA", class = "btn-action",
icon = icon('import', lib = "glyphicon"))
)
)
)
)
)
#tags$hr()
#p("Batch run: plot Hi-C maps of 20 most likley sequences to follow the selected sequence"),
#actionButton("build_map", "Run", width = '100%', class = "btn-action")
),
div(style = "margin-left: 250px;",
div(
actionButton("vwData", "Data View",icon = icon("table"), width = "285px", class= "slide-btn")
),
fluidRow(style = "margin: 0 0 0 10px; border: 1px solid #E8E8E8; border-radius: 5px; padding: 1px; font-family: Tahoma; font-size: 12px;",
div(id = "DataView", style = "margin: 0px; display: none;",
div(style = "width: 450px; float: left; background: #ece9df; border: 1px solid #E8E8E8; border-radius: 3px; padding: 5px; margin: 0 2px 0 10px;",
DT::DTOutput('seqLen')
),
div(style = "width: calc(100% - 580px); float: left; margin-left: 5px;",
div(style = "border-left: 3px solid #E8E8E8; border-radius: 3px;",
div(
actionButton("vwStats", "Stats",icon = icon("stats", lib = "glyphicon"), width = "200px"),
tags$style(HTML("#vwStats{font-size: 12px; background-color: #ece9df; border-top-right-radius: 30px; padding-top: 5px; border: 1px solid #E8E8E8;
padding-bottom: 5px; font-weight: 550; margin-top: 0; margin-left: -5px;}"))
),
fluidRow(id = "VwStats", style = "margin: 1px 0 0 10px; border: 1px solid #E8E8E8; border-radius: 3px; display: none;",
plotOutput("lenHist", width = "500px")
),
div(
actionButton("vwLnkData", "Contact Data",icon = icon("table"), width = "200px"),
tags$style(HTML("#vwLnkData{font-size: 12px; background-color: #ece9df; border-top-right-radius: 30px; padding-top: 5px; border: 1px solid #E8E8E8;
padding-bottom: 5px; font-weight: 550; margin-top: 5px; margin-left: -5px;}"))
)
),
fluidRow(id = "VwLnkData", style = "padding: 5px; margin: 0 0 0 10px; border: 1px solid #E8E8E8; border-radius: 3px; display: none;",
DT::DTOutput('contactData')
)
)
)
),
div(
actionButton("vwIntraMap", "Single Map View",icon = icon("table"), width = "285px", class = 'slide-btn')
),
fluidRow(style = "margin: 0 0 0px 10px; border: 1px solid #E8E8E8; padding: 1px;",
div(id = "IntraMap", style = "height: calc(100% + 160px); display: none; ",
fluidRow(style = "margin: 0 0 2px 0; background-color: #ece9df; height: 32px;",
radioGroupButtons("action", NULL,
choices = c("View","Cut", "Join"),
selected = "View", size = "sm", status = "gray",
width = "250px", justified = TRUE, individual = TRUE,
#checkIcon = list(
# yes = tags$i(class = "fa fa-circle",
# style = "color: black"),
# no = tags$i(class = "fa fa-circle-o",
# style = "color: white"))
)
),
div(style = "border: 1px solid #E8E8E8; width: 100%; padding: 5px; background-color: #ece9df; border-radius: 3px; font-size: 12px; width: 270px; float: left;",
conditionalPanel(
condition = "input.action == 'Join'",
tags$button(id = "intConfig1", class = "btn btn-default btn-md btn-drop",
list(NULL, label = "Inter-sequence Links"),
htmltools::tags$span(class = "glyphicon glyphicon-triangle-bottom")
),
div(style = "border: 1px solid #E8E8E8; padding: 1px; background-color: white; margin-bottom: 10px;",
div(id ="IntConfig1", style = "padding: 10px;",
fluidRow(style = "margin: 0px;",
numericInput("edgeSize1", "Edge Size (bp):", value = 1,
min = 0, max = 500000, step= 10000),
div(style = "margin-top: -13px;",
sliderInput("edgeSize2", NULL, value = 0,
min = 0, max = 0, width = '100%', ticks = TRUE)
),
div(style = "margin-top: -30px;",
withBusyIndicatorUI(
actionButton("calcIntraction1", "Calculate", class = "btn-action",
icon = icon('calculator', lib = "font-awesome"))
)
)
)
)
),
conditionalPanel(
condition = "input.calcIntraction1 != 0 | input.calcIntraction2 != 0",
div(style = "border: 1px solid #E8E8E8; padding: 7px; background-color: white; margin-bottom: 0px; margin-top: -5px; border-radius: 5px;",
radioGroupButtons("dir1", "Leading Sequence:", size = "xs",
choices = c(`<i class='glyphicon glyphicon-backward'></i>` = "Backward",
`<i class='glyphicon glyphicon-forward'></i>` = "Forward"),
selected = "Forward", justified = TRUE, status = "gray",
checkIcon = list(
yes = tags$i(class = "fa fa-circle",
style = "color: black"),
no = tags$i(class = "fa fa-circle-o",
style = "color: white"))
),
div(style = "margin-top: -13px;",
pickerInput("seq1", NULL, choices = NULL,
width = '100%', multiple = FALSE,
options = list(style = "btn-default btn-md btn-picker",
size = 10, `live-search` = TRUE)
),
pickerInput("subseq1", "Subsequence:", choices = NULL, width = '100%', multiple = FALSE,
options = list(style = "btn-default btn-md btn-picker",
size = 10, `live-search` = TRUE)
),
div(style = "margin-top: -15px;",
shinyWidgets::switchInput("subseq1_strand", label = "Strand", offLabel = "-", onLabel = "+",
value = TRUE, size = "mini", onStatus = "primary",
offStatus = "primary", labelWidth = '70', handleWidth = '70')
),
withBusyIndicatorUI(
actionButton("join", "Join", class = "btn-action",
icon = icon('plus-sign', lib = "glyphicon"))
)
)
)
)
),
conditionalPanel(
condition = "input.action != 'Join'",
fluidRow(style = "border: 1px solid #E8E8E8; border-radius: 3px; padding: 10px 0 10px 10px; background-color: white; margin: 0;",
div(style = "float: left; width: calc(100% - 70px); margin-top: -1px;",
pickerInput("seq", "Sequence:", choices = "",
width = '100%', multiple = FALSE,
options = list(style = "btn-default btn-md btn-picker",
size = 10, `live-search` = TRUE)
)
),
div(style = "float: right; width: 65px; margin: 20px 0 0 5px; padding: 1px; height: 33px;",
actionBttn("down", NULL, icon = icon('arrow-down', lib = "glyphicon"),
style = "material-circle", size = "xs"),
actionBttn("up", NULL, icon = icon('arrow-up', lib = "glyphicon"),
style = "material-circle", size = "xs")
),
conditionalPanel(
condition = "input.seq.length > 0",
div(style = "margin-top: -5px; margin-right: 10px;",
conditionalPanel(
condition = "input.action == 'Cut'",
numericInput("cutPos", "Break position (bp):", value = 0,
min = 0, max = 50000000, step= 100),
textInput("frag1Name", "First fragmnet name:", value = "Default", width = '100%'),
textInput("frag2Name", "Second fragmnet name:", value = "Default", width = '100%'),
withBusyIndicatorUI(
actionButton("cut1", "Break Sequence", class = "btn-action",
icon = icon('scissors', lib = "glyphicon"))
)
)
)
)
)
),
conditionalPanel(
condition = "input.join | input.cut1 | input.cut2 ",
withBusyIndicatorUI(
actionButton("saveBinData2", "Save changes to disk", width = '100%', class = "dbutt",
icon = icon("floppy-disk", lib = "glyphicon")
)
)
)
),
div(style = "width: calc(100% - 270px); float: left;",
div(style = "width: 82vh; border: 1px solid #E8E8E8; border-radius: 5px; padding: 10px; background: #ece9df; margin: 0px 5px 5px 5px; font-size: 12px;",
conditionalPanel(
condition = "input.action != 'Join'",
actionBttn("exitZoom1", NULL, icon = icon('zoom-out', lib = "glyphicon"), style = "material-circle", size = "xs"),
actionBttn("clearBrush1", NULL, icon = icon('erase', lib = "glyphicon"), style = "material-circle", size = "xs"),
actionBttn("cut2", NULL, icon = icon('scissors', lib = "glyphicon"), style = "material-circle", size = "xs"),
div(style = "border: 1px solid white; border-radius: 5px; margin: 0px; width: 80vh; margin-top: 5px;",
#sliderInput("range", label = NULL, min = 0, max = 100, value = c(0, 100), ticks = FALSE, width = '100%'),
plotOutput("intramap", width = "auto", height = "auto",
dblclick = "intramap_dblclick",
brush = "intramap_brush",
click = "intramap_click") %>%
withLoader(type = "html")
)
),
conditionalPanel(
condition = "input.action == 'Join'",
div(style = "border: 1px solid white; border-radius: 5px; margin: 0px; width: 80vh; margin-top: 5px;",
#sliderInput("range", label = NULL, min = 0, max = 100, value = c(0, 100), ticks = FALSE, width = '100%'),
plotOutput("joinedmap", width = "auto", height = "auto",
brush = "joinedmap_brush",
click = "joinedmap_click") %>%
withLoader(type = "html")
)
)
)
)
)
),
div(
actionButton("vwJointMap2", "Multi Map View",icon = icon("table"), width = "285px", class = 'slide-btn'),
),
fluidRow(style = "margin: 0 0 0 10px; border: 1px solid #E8E8E8; border-radius: 5px; padding: 1px; font-family: Tahoma; font-size: 12px;",
div(id = "VwJointMap2", style ="height: calc(100% + 160px); display: none;",
div(style = "border: 1px solid #E8E8E8; width: 100%; padding: 10px; background-color: #ece9df; border-radius: 3px; font-size: 12px; width: 270px; float: left;",
textAreaInput("seqList", label = NULL, value = "", rows = 6,
placeholder = "Please enter one id per line",
width = '100%', height = '300px', resize = "vertical"),
textInput("titleMap2",label = "Scaffold name:", value = "", width = '100%'),
div(style = "margin-bottom: 20px;",
withBusyIndicatorUI(
actionButton("combineMaps", "Submit", icon = icon("play", lib = "glyphicon") ,width = '100%')
),
tags$style(HTML("#combineMaps{font-size: 12px; font-family: Tahoma; font-weight: 550;}"))
)
),
div(style = "width: calc(100% - 270px); float: left;",
div(style = "width: 82vh; border: 1px solid #E8E8E8; border-radius: 5px; padding: 10px; background: #ece9df; margin: 5px 5px 5px 5px; font-size: 12px;",
fluidRow( style = "margin: 0;",
div( style = "float: left;",
dropdownButton(
circle = TRUE, status = "default", size = "sm",
icon = icon("cog", lib = "glyphicon"), width = "300px",
tooltip = tooltipOptions(title = "Click to edit plot")
)
)
),
fluidRow(style = "border: 1px solid white; border-radius: 5px; margin: 0px; width: 80vh;",
plotOutput("map2", width = "auto", height = "auto", hover = hoverOpts(id = "map2_hover")) %>%
withLoader(type="html")
),
uiOutput("map2_hoverinfo")
)
)
)
)
)
)
)
AliSaei/HiCSuite documentation built on June 15, 2024, 8:26 p.m.
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shinyUI(
fluidPage(style = "font-family: Tahoma;",
div(style = "position: fixed; height: 100%; background: #ece9df; padding: 10px; width: 250px; border-right: 1px solid #E8E8E8; font-family: Tahoma; font-size: 12px;",
fluidRow(style = "margin: 10px 0 0 0;",
tags$button(id = "dtInput", class = "btn btn-default btn-md btn-accordion",
list(NULL, label = "Data Input"),
htmltools::tags$span(class = "glyphicon glyphicon-triangle-bottom")
),
div(style = "border: 1px solid #E8E8E8; border-radius: 3px; padding: 2px; background-color: white; margin-bottom: 10px;",
div(id = "DataInput", style = "padding: 10px;",
radioGroupButtons("mapSrc", "Contact data:", choices = c("Local", "Remote"), selected = "Local",
justified = TRUE, size = "xs", status = "gray",
checkIcon = list(
yes = tags$i(class = "fa fa-circle",
style = "color: black"),
no = tags$i(class = "fa fa-circle-o",
style = "color: white"))),
div(style = "margin-top: -13px;",
conditionalPanel(
condition = "input.mapSrc == 'Local'",
#shiny::fileInput("contactMap", NULL, accept = c("csv", ".txt", ".rds"), width = '100%'),
textInput("directory", "Data Directory"),
#shinyFiles::shinyDirButton('directory', label='Set Data Directory',
# title='Please select a folder',
# class = "btn-dir", icon = icon("folder-open")),
#verbatimTextOutput("dirPath"),
div(style = "margin-top: 0px;",
pickerInput("mapFile", NULL, choices = NULL , multiple = FALSE,
options = list(style = "btn-default btn-md btn-picker", size = 20,
`live-search` = TRUE, tickIcon = "glyphicon-ok",
width = "100%", showTick = TRUE)
)
)
)
),
div(
shinyWidgets::prettySwitch("loadSeqLen", strong("Sequence lengths (optional)"), status = "success")
),
conditionalPanel(
condition = "input.loadSeqLen != 0",
div(style = "margin-top: -10px;",
radioGroupButtons("lenSrc", NULL, choices = c("Local", "Remote"),
selected = "Local", justified = TRUE, size = "xs", status = "gray",
checkIcon = list(
yes = tags$i(class = "fa fa-circle",
style = "color: black"),
no = tags$i(class = "fa fa-circle-o",
style = "color: white"))),
div(style = "margin-top: -13px;",
conditionalPanel(
condition = "input.lenSrc == 'Local'",
#shiny::fileInput("lenFile", NULL, accept = c("csv", ".txt"), width = '100%'),
div(style = "margin-top: 0px;",
pickerInput("lenFile", NULL, choices = NULL , multiple = FALSE,
options = list(style = "btn-default btn-md btn-picker", size = 20,
`live-search` = TRUE, tickIcon = "glyphicon-ok",
width = "100%",showTick = TRUE)
)
)
)
)
)
),
div(style = "margin-top: 0px;",
withBusyIndicatorUI(
actionButton("import_data", "Import Data", class = "btn-action",
icon = icon('import', lib = "glyphicon"))
)
),
div(style = "margin-top: 15px;",
numericInput("binsize2", "Bin size (bp):", value = 1, min = 0, max = 500000, step= 10000),
div(style = "margin-top: -13px;",
sliderInput("binsize", NULL, min = 0, value = 0, max = 0, width = '100%', ticks = TRUE)
),
div(style = "margin-top: -30px;",
withBusyIndicatorUI(
actionButton("updateBinning", "Update", class = "btn-update",
icon = icon('play', lib = "glyphicon"))
)
),
conditionalPanel(
condition = "input.updateBinning",
withBusyIndicatorUI(
actionButton("saveBinData1", "Save changes to disk", width = '100%', class = "dbutt",
icon = icon("floppy-disk", lib = "glyphicon")
)
)
)
)
)
),
tags$button(id = "faInput", class = "btn btn-default btn-md btn-accordion",
list(NULL, label = "Assembly Input (Optional)"),
htmltools::tags$span(class = "glyphicon glyphicon-triangle-bottom")
),
div(style = "border: 1px solid #E8E8E8; border-radius: 3px; padding: 2px; background-color: white; margin-bottom: 10px;",
div(id = "FAInput", style = "padding: 10px; display: none;",
radioGroupButtons("faSrc", "FASTA file:", choices = c("Local", "Remote"), selected = "Local",
justified = TRUE, size = "xs", status = "gray",
checkIcon = list(
yes = tags$i(class = "fa fa-circle",
style = "color: black"),
no = tags$i(class = "fa fa-circle-o",
style = "color: white"))),
div(style = "margin-top: -13px;",
conditionalPanel(
condition = "input.faSrc == 'Local'",
#shiny::fileInput("contactMap", NULL, accept = c("csv", ".txt", ".rds"), width = '100%'),
#shinyFiles::shinyDirButton('directory', label='Set Data Directory',
# title='Please select a folder',
# class = "btn-dir", icon = icon("folder-open")),
#verbatimTextOutput("dirPath"),
div(style = "margin-top: 0px;",
pickerInput("faFile", NULL, choices = NULL , multiple = FALSE,
options = list(style = "btn-default btn-md btn-picker", size = 20,
`live-search` = TRUE, tickIcon = "glyphicon-ok",
width = "100%",showTick = TRUE)
)
),
),
conditionalPanel(
condition = "input.faSrc == 'Remote'",
selectizeInput("faSrc", NULL, choices = "DropBox")
)
),
div(style = "margin-top: 0px;",
withBusyIndicatorUI(
actionButton("import_fasta", "Import FASTA", class = "btn-action",
icon = icon('import', lib = "glyphicon"))
)
)
)
)
)
#tags$hr()
#p("Batch run: plot Hi-C maps of 20 most likley sequences to follow the selected sequence"),
#actionButton("build_map", "Run", width = '100%', class = "btn-action")
),
div(style = "margin-left: 250px;",
div(
actionButton("vwData", "Data View",icon = icon("table"), width = "285px", class= "slide-btn")
),
fluidRow(style = "margin: 0 0 0 10px; border: 1px solid #E8E8E8; border-radius: 5px; padding: 1px; font-family: Tahoma; font-size: 12px;",
div(id = "DataView", style = "margin: 0px; display: none;",
div(style = "width: 450px; float: left; background: #ece9df; border: 1px solid #E8E8E8; border-radius: 3px; padding: 5px; margin: 0 2px 0 10px;",
DT::DTOutput('seqLen')
),
div(style = "width: calc(100% - 580px); float: left; margin-left: 5px;",
div(style = "border-left: 3px solid #E8E8E8; border-radius: 3px;",
div(
actionButton("vwStats", "Stats",icon = icon("stats", lib = "glyphicon"), width = "200px"),
tags$style(HTML("#vwStats{font-size: 12px; background-color: #ece9df; border-top-right-radius: 30px; padding-top: 5px; border: 1px solid #E8E8E8;
padding-bottom: 5px; font-weight: 550; margin-top: 0; margin-left: -5px;}"))
),
fluidRow(id = "VwStats", style = "margin: 1px 0 0 10px; border: 1px solid #E8E8E8; border-radius: 3px; display: none;",
plotOutput("lenHist", width = "500px")
),
div(
actionButton("vwLnkData", "Contact Data",icon = icon("table"), width = "200px"),
tags$style(HTML("#vwLnkData{font-size: 12px; background-color: #ece9df; border-top-right-radius: 30px; padding-top: 5px; border: 1px solid #E8E8E8;
padding-bottom: 5px; font-weight: 550; margin-top: 5px; margin-left: -5px;}"))
)
),
fluidRow(id = "VwLnkData", style = "padding: 5px; margin: 0 0 0 10px; border: 1px solid #E8E8E8; border-radius: 3px; display: none;",
DT::DTOutput('contactData')
)
)
)
),
div(
actionButton("vwIntraMap", "Single Map View",icon = icon("table"), width = "285px", class = 'slide-btn')
),
fluidRow(style = "margin: 0 0 0px 10px; border: 1px solid #E8E8E8; padding: 1px;",
div(id = "IntraMap", style = "height: calc(100% + 160px); display: none; ",
fluidRow(style = "margin: 0 0 2px 0; background-color: #ece9df; height: 32px;",
radioGroupButtons("action", NULL,
choices = c("View","Cut", "Join"),
selected = "View", size = "sm", status = "gray",
width = "250px", justified = TRUE, individual = TRUE,
#checkIcon = list(
# yes = tags$i(class = "fa fa-circle",
# style = "color: black"),
# no = tags$i(class = "fa fa-circle-o",
# style = "color: white"))
)
),
div(style = "border: 1px solid #E8E8E8; width: 100%; padding: 5px; background-color: #ece9df; border-radius: 3px; font-size: 12px; width: 270px; float: left;",
conditionalPanel(
condition = "input.action == 'Join'",
tags$button(id = "intConfig1", class = "btn btn-default btn-md btn-drop",
list(NULL, label = "Inter-sequence Links"),
htmltools::tags$span(class = "glyphicon glyphicon-triangle-bottom")
),
div(style = "border: 1px solid #E8E8E8; padding: 1px; background-color: white; margin-bottom: 10px;",
div(id ="IntConfig1", style = "padding: 10px;",
fluidRow(style = "margin: 0px;",
numericInput("edgeSize1", "Edge Size (bp):", value = 1,
min = 0, max = 500000, step= 10000),
div(style = "margin-top: -13px;",
sliderInput("edgeSize2", NULL, value = 0,
min = 0, max = 0, width = '100%', ticks = TRUE)
),
div(style = "margin-top: -30px;",
withBusyIndicatorUI(
actionButton("calcIntraction1", "Calculate", class = "btn-action",
icon = icon('calculator', lib = "font-awesome"))
)
)
)
)
),
conditionalPanel(
condition = "input.calcIntraction1 != 0 | input.calcIntraction2 != 0",
div(style = "border: 1px solid #E8E8E8; padding: 7px; background-color: white; margin-bottom: 0px; margin-top: -5px; border-radius: 5px;",
radioGroupButtons("dir1", "Leading Sequence:", size = "xs",
choices = c(`<i class='glyphicon glyphicon-backward'></i>` = "Backward",
`<i class='glyphicon glyphicon-forward'></i>` = "Forward"),
selected = "Forward", justified = TRUE, status = "gray",
checkIcon = list(
yes = tags$i(class = "fa fa-circle",
style = "color: black"),
no = tags$i(class = "fa fa-circle-o",
style = "color: white"))
),
div(style = "margin-top: -13px;",
pickerInput("seq1", NULL, choices = NULL,
width = '100%', multiple = FALSE,
options = list(style = "btn-default btn-md btn-picker",
size = 10, `live-search` = TRUE)
),
pickerInput("subseq1", "Subsequence:", choices = NULL, width = '100%', multiple = FALSE,
options = list(style = "btn-default btn-md btn-picker",
size = 10, `live-search` = TRUE)
),
div(style = "margin-top: -15px;",
shinyWidgets::switchInput("subseq1_strand", label = "Strand", offLabel = "-", onLabel = "+",
value = TRUE, size = "mini", onStatus = "primary",
offStatus = "primary", labelWidth = '70', handleWidth = '70')
),
withBusyIndicatorUI(
actionButton("join", "Join", class = "btn-action",
icon = icon('plus-sign', lib = "glyphicon"))
)
)
)
)
),
conditionalPanel(
condition = "input.action != 'Join'",
fluidRow(style = "border: 1px solid #E8E8E8; border-radius: 3px; padding: 10px 0 10px 10px; background-color: white; margin: 0;",
div(style = "float: left; width: calc(100% - 70px); margin-top: -1px;",
pickerInput("seq", "Sequence:", choices = "",
width = '100%', multiple = FALSE,
options = list(style = "btn-default btn-md btn-picker",
size = 10, `live-search` = TRUE)
)
),
div(style = "float: right; width: 65px; margin: 20px 0 0 5px; padding: 1px; height: 33px;",
actionBttn("down", NULL, icon = icon('arrow-down', lib = "glyphicon"),
style = "material-circle", size = "xs"),
actionBttn("up", NULL, icon = icon('arrow-up', lib = "glyphicon"),
style = "material-circle", size = "xs")
),
conditionalPanel(
condition = "input.seq.length > 0",
div(style = "margin-top: -5px; margin-right: 10px;",
conditionalPanel(
condition = "input.action == 'Cut'",
numericInput("cutPos", "Break position (bp):", value = 0,
min = 0, max = 50000000, step= 100),
textInput("frag1Name", "First fragmnet name:", value = "Default", width = '100%'),
textInput("frag2Name", "Second fragmnet name:", value = "Default", width = '100%'),
withBusyIndicatorUI(
actionButton("cut1", "Break Sequence", class = "btn-action",
icon = icon('scissors', lib = "glyphicon"))
)
)
)
)
)
),
conditionalPanel(
condition = "input.join | input.cut1 | input.cut2 ",
withBusyIndicatorUI(
actionButton("saveBinData2", "Save changes to disk", width = '100%', class = "dbutt",
icon = icon("floppy-disk", lib = "glyphicon")
)
)
)
),
div(style = "width: calc(100% - 270px); float: left;",
div(style = "width: 82vh; border: 1px solid #E8E8E8; border-radius: 5px; padding: 10px; background: #ece9df; margin: 0px 5px 5px 5px; font-size: 12px;",
conditionalPanel(
condition = "input.action != 'Join'",
actionBttn("exitZoom1", NULL, icon = icon('zoom-out', lib = "glyphicon"), style = "material-circle", size = "xs"),
actionBttn("clearBrush1", NULL, icon = icon('erase', lib = "glyphicon"), style = "material-circle", size = "xs"),
actionBttn("cut2", NULL, icon = icon('scissors', lib = "glyphicon"), style = "material-circle", size = "xs"),
div(style = "border: 1px solid white; border-radius: 5px; margin: 0px; width: 80vh; margin-top: 5px;",
#sliderInput("range", label = NULL, min = 0, max = 100, value = c(0, 100), ticks = FALSE, width = '100%'),
plotOutput("intramap", width = "auto", height = "auto",
dblclick = "intramap_dblclick",
brush = "intramap_brush",
click = "intramap_click") %>%
withLoader(type = "html")
)
),
conditionalPanel(
condition = "input.action == 'Join'",
div(style = "border: 1px solid white; border-radius: 5px; margin: 0px; width: 80vh; margin-top: 5px;",
#sliderInput("range", label = NULL, min = 0, max = 100, value = c(0, 100), ticks = FALSE, width = '100%'),
plotOutput("joinedmap", width = "auto", height = "auto",
brush = "joinedmap_brush",
click = "joinedmap_click") %>%
withLoader(type = "html")
)
)
)
)
)
),
div(
actionButton("vwJointMap2", "Multi Map View",icon = icon("table"), width = "285px", class = 'slide-btn'),
),
fluidRow(style = "margin: 0 0 0 10px; border: 1px solid #E8E8E8; border-radius: 5px; padding: 1px; font-family: Tahoma; font-size: 12px;",
div(id = "VwJointMap2", style ="height: calc(100% + 160px); display: none;",
div(style = "border: 1px solid #E8E8E8; width: 100%; padding: 10px; background-color: #ece9df; border-radius: 3px; font-size: 12px; width: 270px; float: left;",
textAreaInput("seqList", label = NULL, value = "", rows = 6,
placeholder = "Please enter one id per line",
width = '100%', height = '300px', resize = "vertical"),
textInput("titleMap2",label = "Scaffold name:", value = "", width = '100%'),
div(style = "margin-bottom: 20px;",
withBusyIndicatorUI(
actionButton("combineMaps", "Submit", icon = icon("play", lib = "glyphicon") ,width = '100%')
),
tags$style(HTML("#combineMaps{font-size: 12px; font-family: Tahoma; font-weight: 550;}"))
)
),
div(style = "width: calc(100% - 270px); float: left;",
div(style = "width: 82vh; border: 1px solid #E8E8E8; border-radius: 5px; padding: 10px; background: #ece9df; margin: 5px 5px 5px 5px; font-size: 12px;",
fluidRow( style = "margin: 0;",
div( style = "float: left;",
dropdownButton(
circle = TRUE, status = "default", size = "sm",
icon = icon("cog", lib = "glyphicon"), width = "300px",
tooltip = tooltipOptions(title = "Click to edit plot")
)
)
),
fluidRow(style = "border: 1px solid white; border-radius: 5px; margin: 0px; width: 80vh;",
plotOutput("map2", width = "auto", height = "auto", hover = hoverOpts(id = "map2_hover")) %>%
withLoader(type="html")
),
uiOutput("map2_hoverinfo")
)
)
)
)
)
)
)
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