inst/shiny-apps/scaffoldR/globals/scaf_ui.R
In AliSaei/HiCSuite: Genome Scaffolding using Hi-C data
shinyUI(
fluidPage(style = "font-family: Tahoma;",
div(style = "position: fixed; height: 100%; background: #ece9df; padding: 10px; width: 250px; border-right: 1px solid #E8E8E8; font-family: Tahoma; font-size: 12px;",
fluidRow(style = "margin: 10px 0 0 0;",
tags$button(id = "intConfig2", class = "btn btn-default btn-md btn-accordion",
list(NULL, label = "Trans Interactions"),
htmltools::tags$span(class = "glyphicon glyphicon-triangle-bottom")
),
div(style = "border: 1px solid #E8E8E8; border-radius: 3px; padding: 2px; background-color: white; margin-bottom: 10px;",
div(id = "IntConfig2", style = "padding: 5px;",
radioGroupButtons("lnkDataSrc", "Data source:", choices = c("Calculate", "Import"),
selected = "Calculate",
justified = TRUE, size = "xs", status = "gray",
checkIcon = list(
yes = tags$i(class = "fa fa-circle",
style = "color: black"),
no = tags$i(class = "fa fa-circle-o",
style = "color: white"))),
conditionalPanel(
condition = "input.lnkDataSrc == 'Calculate'",
fluidRow(style = "margin: -12px 0 0 0; border-top: 1px solid #E8E8E8; padding-top: 5px;",
numericInput("edgeSize3", "Edge Size (bp):", value = 1,
min = 0, max = 500000, step= 10000),
div(style = "margin-top: -13px;",
sliderInput("edgeSize4", NULL, value = 0,
min = 0, max = 0, width = '100%', ticks = TRUE)
),
div(style = "margin-top: -30px;",
withBusyIndicatorUI(
actionButton("calcIntraction2", "Calculate", class = "btn-action",
icon = icon('calculator', lib = "font-awesome"))
)
),
conditionalPanel(
condition = "input.calcIntraction2 != 0 | input.calcIntraction1 != 0",
withBusyIndicatorUI(
actionButton("svInteractionCounts", "Save to disk", width = '100%', class = "dbutt",
icon = icon("floppy-disk", lib = "glyphicon")
)
)
)
)
),
conditionalPanel(
condition = "input.lnkDataSrc == 'Import'",
div(style = "margin-top: -12px;",
pickerInput("lnkFile", NULL, choices = NULL , multiple = FALSE,
options = list(style = "btn-default btn-md btn-picker", size = 20,
`live-search` = TRUE, tickIcon = "glyphicon-ok",
width = "100%", showTick = TRUE)
),
div(style = "margin-top: 0px;",
withBusyIndicatorUI(
actionButton("importLnkFile", "Import", class = "btn-action",
icon = icon('import', lib = "glyphicon"))
)
)
)
)
)
),
tags$button(id = "scafConfig", class = "btn btn-default btn-md btn-accordion",
list(NULL, label = "Scaffolding"),
htmltools::tags$span(class = "glyphicon glyphicon-triangle-bottom")
),
div(style = "border: 1px solid #E8E8E8; border-radius: 5px; padding: 2px; background-color: white; margin-top: 0px; ",
div(id = "ScafConfig", style = "padding: 5px; display: none;",
div(
fluidRow(style = "margin: 0px;",
radioGroupButtons("dir2", "Leading sequence:", size = "xs",
choices = c(`<i class='glyphicon glyphicon-backward'></i>` = "Backward",
`<i class='glyphicon glyphicon-forward'></i>` = "Forward"),
selected = "Forward", justified = TRUE, status = "gray",
checkIcon = list(
yes = tags$i(class = "fa fa-circle",
style = "color: black"),
no = tags$i(class = "fa fa-circle-o",
style = "color: white")))
),
fluidRow(style = "margin: -15px 0 0 0;",
pickerInput("seq2", NULL, choices = "", width = '100%', multiple = FALSE,
options = list(style = "btn-default btn-md btn-picker",
size = 10, `live-search` = TRUE)),
div(style = "margin-top: -15px;",
shinyWidgets::switchInput("strand_2", label = "Strand",
offLabel = "-", onLabel = "+",
value = TRUE, size = "mini", onStatus = "primary",
offStatus = "primary", labelWidth = '100',
handleWidth = '100')
)
),
fluidRow(style = "margin: 0px;",
div(style = "float: left; width: calc(100% - 70px); margin-top: -1px;",
pickerInput("subseq2", "Subsequent Seq:", choices = NULL, width = '100%',
options = list(style = "btn-default btn-md btn-picker", size = 10, `live-search` = TRUE)
),
div(style = "margin-top: -15px;",
shinyWidgets::switchInput("strand_3", label = "Strand", offLabel = "-", onLabel = "+",
value = TRUE, size = "mini", onStatus = "primary",
offStatus = "primary", labelWidth = '70', handleWidth = '70')
)
),
div(style = "float: right; width: 70px; margin: 20px 0 0 0; padding: 1px 1px 1px 5px; height: 33px;",
actionBttn("down1", NULL, icon = icon('arrow-down', lib = "glyphicon"),
style = "material-circle", color = "default", size = "xs"),
actionBttn("up1", NULL, icon = icon('arrow-up', lib = "glyphicon"),
style = "material-circle", color = "default", size = "xs")
)
),
p("Filters:", style = "font-weight: 550;"),
fluidRow(style = "margin: -5px 0 0 0; border: 1px solid #E8E8E8; padding:2px; border-radius: 3px; background: #E8E8E8;",
div(style = "margin: 0;",
sliderInput("maxLinkDen", NULL, value = 1, min = 0, max = 1,
width = '100%', ticks = FALSE, pre = "Max link density:")
),
div(style = "margin-top: -10px;",
sliderInput("minSeqLen", NULL, value = 0, min = 0, max = 1,
width = '100%', ticks = FALSE, pre = "Min length: ", post = " Mb")
)
),
#textInput("chr",label = "Assembled sequence:", value = "", width = '100%'),
#tags$hr(),
div(style = "margin-top: 10px;",
withBusyIndicatorUI(
actionButton("add", "Add to scaffold", class = "btn-action",
icon = icon("plus", lib = "font-awesome"))
),
withBusyIndicatorUI(
actionButton("excludeSeq", "Exclude Sequence", class = "btn-action",
icon = icon("xmark"))
)
)
)
)
)
)
#tags$hr()
#p("Batch run: plot Hi-C maps of 20 most likley sequences to follow the selected sequence"),
#actionButton("build_map", "Run", width = '100%', class = "btn-action")
),
div(style = "margin-left: 250px;",
div(
actionButton("vwData1", "Data View",icon = icon("table"), width = "285px", class= "slide-btn")
),
fluidRow(style = "margin: 0 0 0 10px; border: 1px solid #E8E8E8; border-radius: 5px; padding: 1px; font-family: Tahoma; font-size: 12px;",
div(id = "DataView1", style = "margin: 0px; display: none;",
div(style = "background: #ece9df; border: 1px solid #E8E8E8; border-radius: 3px; padding: 5px; margin: 0 2px 0 10px;",
DT::DTOutput("interactionCounts") ,
downloadButton("interactionCountsExp", "Download All Data")
)
)
),
div(
actionButton("vwScaf", "Scaffolding View",icon = icon("table"), width = "285px", class= "slide-btn")
),
fluidRow(style = "margin: 0 0 0 10px; border: 1px solid #E8E8E8; border-radius: 5px; padding: 1px; font-family: Tahoma; font-size: 12px; ",
div(id = "VwScaf", style ="height: calc(100% + 160px); display: none;",
div(style = "border: 1px solid #E8E8E8; padding: 5px; background-color: #ece9df; border-radius: 3px; font-size: 12px; width: 300px; float: left;",
#div("Setting", icon("triangle-bottom", class = "glyph-icon", lib = "glyphicon")),
fluidRow(style = "margin: 0px;",
div(style = "width: 35px; float: left; padding:5px;",
actionBttn("edit", NULL, icon = icon('edit', lib = "glyphicon"),
style = "material-circle", size = "xs"),
shinyjs::hidden(
actionBttn("confirm", NULL, icon = icon('check', lib = "glyphicon"),
style = "material-circle", size = "xs")
),
actionBttn("erase", NULL, icon = icon('erase', lib = "glyphicon"),
style = "material-circle", size = "xs"),
actionBttn("clipbtn", NULL, icon = icon('copy', lib = "glyphicon"),
style = "material-circle", size = "xs"),
actionBttn("reverse", NULL, icon = icon('sort-by-alphabet-alt', lib = "glyphicon"),
style = "material-circle", size = "xs"),
actionBttn("export", NULL, icon = icon('save', lib = "glyphicon"),
style = "material-circle", size = "xs")
),
div(style = "width: calc(100% - 35px); float: left; padding: 2px;",
div(id = "CheckBox", style = "border: 1px solid #F4F4F4; padding: 5px; border-radius: 3px; min-height: 150px; max-height: 550px; overflow: auto; background: white; margin-right: 2px; resize: vertical; overflow: auto;",
checkboxGroupInput("anchored_seqs", "Scaffold:", choices = NULL)
),
hidden(
div(id = "EditBox" , style = "margin-top: 0px;",
textAreaInput("scaf_edit", label = NULL, value = "",
placeholder = "Please enter one id per line",
width = '100%', height = '100%', resize = "vertical")
)
)
)
),
conditionalPanel(
condition = "input.inputType == 'Manual'",
div(style = "margin-top: -15px;",
textAreaInput("scaf_man", label = NULL, value = "",
placeholder = "Please enter one id per line",
width = '100%', height = "300px", resize = "vertical")
)
),
div(
withBusyIndicatorUI(
textAreaInput("excluded_seqs", label = "Excluded sequences:", value = "",
placeholder = "please enter one id per line",
width = '100%', height = '200px', resize = "vertical")
)
)
),
div(style = "margin-left: 5px; float: left; width: calc(100% - 320px);",
div(style = "border-left: 3px solid #E8E8E8;",
div(
actionButton("vwJointMap", "Scaffolding Map",icon = icon("table"), width = "200px"),
tags$style(HTML("#vwJointMap{font-size: 12px; background-color:#ece9df; border-top-right-radius: 30px; padding-top: 5px; border: 1px solid #E8E8E8;
padding-bottom: 5px; font-weight: 550; margin-top: 0px; margin-left: -5px;}"))
),
fluidRow(id = "VwJointMap", style = "margin: 0 0 0 10px; border: 1px solid #E8E8E8; border-radius: 5px; padding: 1px; font-family: Tahoma; font-size: 12px;",
div(style = "font-size: 12px; font-family: Tahoma; float: left;",
fluidRow(style = "margin: 2px 5px 0 5px; background: #ece9df; padding: 1px; border: 1px solid #F4F4F4; height: 37px; border-radius: 5px;",
div("Number of sequences to plot from the leading end:", style = "width: 300px; float: left; padding: 7px;"),
div(style = "width: calc(100% - 500px); float: left;",
numericInput("nrSeq", NULL, value = 1, min = 1, max = 10, step= 1, width = '100%')
),
div(style = "float: right; ",
actionButton("refresh", NULL, icon = icon('refresh', lib = "glyphicon"), width = '198px')
),
),
div(style = "width: 82vh; border: 1px solid #E8E8E8; border-radius: 5px; padding: 10px; background: #ece9df; margin: 5px 5px 5px 5px; font-size: 12px;",
div(
actionBttn("exitZoom2", NULL, icon = icon('zoom-out', lib = "glyphicon"),
style = "material-circle", size = "xs"),
actionBttn("clearBrush2", NULL, icon = icon('erase', lib = "glyphicon"),
style = "material-circle", size = "xs")
),
div(style = "border: 1px solid white; border-radius: 5px; margin: 0px; width: 80vh; margin-top: 5px;",
plotOutput("map1", width = "auto", height = "auto",
brush = "map1_brush",
hover = hoverOpts(id = "map1_hover")) %>%
withLoader(type = "html")
)
)
),
div(style = "width: calc(100% - 84vh); float: left; margin-left: 5px;",
div(style = "border-left: 3px solid #E8E8E8;",
div(
actionButton("vwStats2", "Stats",icon = icon("stats", lib = "glyphicon"), width = "200px"),
tags$style(HTML("#vwStats2{font-size: 12px; background-color: #ece9df; border-top-right-radius: 30px; padding-top: 5px; border: 1px solid #E8E8E8;
padding-bottom: 5px; font-weight: 550; margin-top: 0; margin-left: -5px;}"))
),
fluidRow(id = "VwStats2", style = "margin: 1px 0 0 10px; border: 1px solid #E8E8E8; border-radius: 3px; display: none;"
),
div(
actionButton("vwLnkData2", "Contact Data", icon = icon("table"), width = "200px"),
tags$style(HTML("#vwLnkData2{font-size: 12px; background-color: #ece9df; border-top-right-radius: 30px; padding-top: 5px; border: 1px solid #E8E8E8;
padding-bottom: 5px; font-weight: 550; margin-top: 5px; margin-left: -5px;}"))
)
),
fluidRow(id = "VwLnkData2", style = "padding: 5px; margin: 0 0 0 10px; border: 1px solid #E8E8E8; border-radius: 3px;",
DTOutput("Subsequent")
)
)
),
div(
actionButton("vwJointMap3", "Intra-scaffold Map",icon = icon("table"), width = "200px"),
tags$style(HTML("#vwJointMap2{font-size: 12px; background-color:#ece9df; border-top-right-radius: 30px; padding-top: 5px; border: 1px solid #E8E8E8;
padding-bottom: 5px; font-weight: 550; margin-top: 5px; margin-left: -5px;}"))
)
),
fluidRow(style = "margin: 0 0 0 10px; border: 1px solid #E8E8E8; border-radius: 5px; padding: 1px; font-family: Tahoma; font-size: 12px;",
div(id = "VwJointMap3", style ="height: calc(100% + 160px); display: none;",
div(style = "width: calc(100% - 270px); float: left;",
div(style = "width: 82vh; border: 1px solid #E8E8E8; border-radius: 5px; padding: 10px; background: #ece9df; margin: 5px 5px 5px 5px; font-size: 12px;",
fluidRow( style = "margin: 0;",
div( style = "float: left;",
dropdownButton(
circle = TRUE, status = "default", size = "sm",
icon = icon("cog", lib = "glyphicon"), width = "300px",
tooltip = tooltipOptions(title = "Click to edit plot")
)
)
)
# fluidRow(style = "border: 1px solid white; border-radius: 5px; margin: 0px; width: 80vh;"
# plotOutput("map2", width = "auto", height = "auto", hover = hoverOpts(id = "map2_hover")) %>%
# withLoader(type="html")
# )
#uiOutput("map2_hoverinfo")
)
)
)
)
)
)
)
)
)
)
AliSaei/HiCSuite documentation built on June 15, 2024, 8:26 p.m.
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shinyUI(
fluidPage(style = "font-family: Tahoma;",
div(style = "position: fixed; height: 100%; background: #ece9df; padding: 10px; width: 250px; border-right: 1px solid #E8E8E8; font-family: Tahoma; font-size: 12px;",
fluidRow(style = "margin: 10px 0 0 0;",
tags$button(id = "intConfig2", class = "btn btn-default btn-md btn-accordion",
list(NULL, label = "Trans Interactions"),
htmltools::tags$span(class = "glyphicon glyphicon-triangle-bottom")
),
div(style = "border: 1px solid #E8E8E8; border-radius: 3px; padding: 2px; background-color: white; margin-bottom: 10px;",
div(id = "IntConfig2", style = "padding: 5px;",
radioGroupButtons("lnkDataSrc", "Data source:", choices = c("Calculate", "Import"),
selected = "Calculate",
justified = TRUE, size = "xs", status = "gray",
checkIcon = list(
yes = tags$i(class = "fa fa-circle",
style = "color: black"),
no = tags$i(class = "fa fa-circle-o",
style = "color: white"))),
conditionalPanel(
condition = "input.lnkDataSrc == 'Calculate'",
fluidRow(style = "margin: -12px 0 0 0; border-top: 1px solid #E8E8E8; padding-top: 5px;",
numericInput("edgeSize3", "Edge Size (bp):", value = 1,
min = 0, max = 500000, step= 10000),
div(style = "margin-top: -13px;",
sliderInput("edgeSize4", NULL, value = 0,
min = 0, max = 0, width = '100%', ticks = TRUE)
),
div(style = "margin-top: -30px;",
withBusyIndicatorUI(
actionButton("calcIntraction2", "Calculate", class = "btn-action",
icon = icon('calculator', lib = "font-awesome"))
)
),
conditionalPanel(
condition = "input.calcIntraction2 != 0 | input.calcIntraction1 != 0",
withBusyIndicatorUI(
actionButton("svInteractionCounts", "Save to disk", width = '100%', class = "dbutt",
icon = icon("floppy-disk", lib = "glyphicon")
)
)
)
)
),
conditionalPanel(
condition = "input.lnkDataSrc == 'Import'",
div(style = "margin-top: -12px;",
pickerInput("lnkFile", NULL, choices = NULL , multiple = FALSE,
options = list(style = "btn-default btn-md btn-picker", size = 20,
`live-search` = TRUE, tickIcon = "glyphicon-ok",
width = "100%", showTick = TRUE)
),
div(style = "margin-top: 0px;",
withBusyIndicatorUI(
actionButton("importLnkFile", "Import", class = "btn-action",
icon = icon('import', lib = "glyphicon"))
)
)
)
)
)
),
tags$button(id = "scafConfig", class = "btn btn-default btn-md btn-accordion",
list(NULL, label = "Scaffolding"),
htmltools::tags$span(class = "glyphicon glyphicon-triangle-bottom")
),
div(style = "border: 1px solid #E8E8E8; border-radius: 5px; padding: 2px; background-color: white; margin-top: 0px; ",
div(id = "ScafConfig", style = "padding: 5px; display: none;",
div(
fluidRow(style = "margin: 0px;",
radioGroupButtons("dir2", "Leading sequence:", size = "xs",
choices = c(`<i class='glyphicon glyphicon-backward'></i>` = "Backward",
`<i class='glyphicon glyphicon-forward'></i>` = "Forward"),
selected = "Forward", justified = TRUE, status = "gray",
checkIcon = list(
yes = tags$i(class = "fa fa-circle",
style = "color: black"),
no = tags$i(class = "fa fa-circle-o",
style = "color: white")))
),
fluidRow(style = "margin: -15px 0 0 0;",
pickerInput("seq2", NULL, choices = "", width = '100%', multiple = FALSE,
options = list(style = "btn-default btn-md btn-picker",
size = 10, `live-search` = TRUE)),
div(style = "margin-top: -15px;",
shinyWidgets::switchInput("strand_2", label = "Strand",
offLabel = "-", onLabel = "+",
value = TRUE, size = "mini", onStatus = "primary",
offStatus = "primary", labelWidth = '100',
handleWidth = '100')
)
),
fluidRow(style = "margin: 0px;",
div(style = "float: left; width: calc(100% - 70px); margin-top: -1px;",
pickerInput("subseq2", "Subsequent Seq:", choices = NULL, width = '100%',
options = list(style = "btn-default btn-md btn-picker", size = 10, `live-search` = TRUE)
),
div(style = "margin-top: -15px;",
shinyWidgets::switchInput("strand_3", label = "Strand", offLabel = "-", onLabel = "+",
value = TRUE, size = "mini", onStatus = "primary",
offStatus = "primary", labelWidth = '70', handleWidth = '70')
)
),
div(style = "float: right; width: 70px; margin: 20px 0 0 0; padding: 1px 1px 1px 5px; height: 33px;",
actionBttn("down1", NULL, icon = icon('arrow-down', lib = "glyphicon"),
style = "material-circle", color = "default", size = "xs"),
actionBttn("up1", NULL, icon = icon('arrow-up', lib = "glyphicon"),
style = "material-circle", color = "default", size = "xs")
)
),
p("Filters:", style = "font-weight: 550;"),
fluidRow(style = "margin: -5px 0 0 0; border: 1px solid #E8E8E8; padding:2px; border-radius: 3px; background: #E8E8E8;",
div(style = "margin: 0;",
sliderInput("maxLinkDen", NULL, value = 1, min = 0, max = 1,
width = '100%', ticks = FALSE, pre = "Max link density:")
),
div(style = "margin-top: -10px;",
sliderInput("minSeqLen", NULL, value = 0, min = 0, max = 1,
width = '100%', ticks = FALSE, pre = "Min length: ", post = " Mb")
)
),
#textInput("chr",label = "Assembled sequence:", value = "", width = '100%'),
#tags$hr(),
div(style = "margin-top: 10px;",
withBusyIndicatorUI(
actionButton("add", "Add to scaffold", class = "btn-action",
icon = icon("plus", lib = "font-awesome"))
),
withBusyIndicatorUI(
actionButton("excludeSeq", "Exclude Sequence", class = "btn-action",
icon = icon("xmark"))
)
)
)
)
)
)
#tags$hr()
#p("Batch run: plot Hi-C maps of 20 most likley sequences to follow the selected sequence"),
#actionButton("build_map", "Run", width = '100%', class = "btn-action")
),
div(style = "margin-left: 250px;",
div(
actionButton("vwData1", "Data View",icon = icon("table"), width = "285px", class= "slide-btn")
),
fluidRow(style = "margin: 0 0 0 10px; border: 1px solid #E8E8E8; border-radius: 5px; padding: 1px; font-family: Tahoma; font-size: 12px;",
div(id = "DataView1", style = "margin: 0px; display: none;",
div(style = "background: #ece9df; border: 1px solid #E8E8E8; border-radius: 3px; padding: 5px; margin: 0 2px 0 10px;",
DT::DTOutput("interactionCounts") ,
downloadButton("interactionCountsExp", "Download All Data")
)
)
),
div(
actionButton("vwScaf", "Scaffolding View",icon = icon("table"), width = "285px", class= "slide-btn")
),
fluidRow(style = "margin: 0 0 0 10px; border: 1px solid #E8E8E8; border-radius: 5px; padding: 1px; font-family: Tahoma; font-size: 12px; ",
div(id = "VwScaf", style ="height: calc(100% + 160px); display: none;",
div(style = "border: 1px solid #E8E8E8; padding: 5px; background-color: #ece9df; border-radius: 3px; font-size: 12px; width: 300px; float: left;",
#div("Setting", icon("triangle-bottom", class = "glyph-icon", lib = "glyphicon")),
fluidRow(style = "margin: 0px;",
div(style = "width: 35px; float: left; padding:5px;",
actionBttn("edit", NULL, icon = icon('edit', lib = "glyphicon"),
style = "material-circle", size = "xs"),
shinyjs::hidden(
actionBttn("confirm", NULL, icon = icon('check', lib = "glyphicon"),
style = "material-circle", size = "xs")
),
actionBttn("erase", NULL, icon = icon('erase', lib = "glyphicon"),
style = "material-circle", size = "xs"),
actionBttn("clipbtn", NULL, icon = icon('copy', lib = "glyphicon"),
style = "material-circle", size = "xs"),
actionBttn("reverse", NULL, icon = icon('sort-by-alphabet-alt', lib = "glyphicon"),
style = "material-circle", size = "xs"),
actionBttn("export", NULL, icon = icon('save', lib = "glyphicon"),
style = "material-circle", size = "xs")
),
div(style = "width: calc(100% - 35px); float: left; padding: 2px;",
div(id = "CheckBox", style = "border: 1px solid #F4F4F4; padding: 5px; border-radius: 3px; min-height: 150px; max-height: 550px; overflow: auto; background: white; margin-right: 2px; resize: vertical; overflow: auto;",
checkboxGroupInput("anchored_seqs", "Scaffold:", choices = NULL)
),
hidden(
div(id = "EditBox" , style = "margin-top: 0px;",
textAreaInput("scaf_edit", label = NULL, value = "",
placeholder = "Please enter one id per line",
width = '100%', height = '100%', resize = "vertical")
)
)
)
),
conditionalPanel(
condition = "input.inputType == 'Manual'",
div(style = "margin-top: -15px;",
textAreaInput("scaf_man", label = NULL, value = "",
placeholder = "Please enter one id per line",
width = '100%', height = "300px", resize = "vertical")
)
),
div(
withBusyIndicatorUI(
textAreaInput("excluded_seqs", label = "Excluded sequences:", value = "",
placeholder = "please enter one id per line",
width = '100%', height = '200px', resize = "vertical")
)
)
),
div(style = "margin-left: 5px; float: left; width: calc(100% - 320px);",
div(style = "border-left: 3px solid #E8E8E8;",
div(
actionButton("vwJointMap", "Scaffolding Map",icon = icon("table"), width = "200px"),
tags$style(HTML("#vwJointMap{font-size: 12px; background-color:#ece9df; border-top-right-radius: 30px; padding-top: 5px; border: 1px solid #E8E8E8;
padding-bottom: 5px; font-weight: 550; margin-top: 0px; margin-left: -5px;}"))
),
fluidRow(id = "VwJointMap", style = "margin: 0 0 0 10px; border: 1px solid #E8E8E8; border-radius: 5px; padding: 1px; font-family: Tahoma; font-size: 12px;",
div(style = "font-size: 12px; font-family: Tahoma; float: left;",
fluidRow(style = "margin: 2px 5px 0 5px; background: #ece9df; padding: 1px; border: 1px solid #F4F4F4; height: 37px; border-radius: 5px;",
div("Number of sequences to plot from the leading end:", style = "width: 300px; float: left; padding: 7px;"),
div(style = "width: calc(100% - 500px); float: left;",
numericInput("nrSeq", NULL, value = 1, min = 1, max = 10, step= 1, width = '100%')
),
div(style = "float: right; ",
actionButton("refresh", NULL, icon = icon('refresh', lib = "glyphicon"), width = '198px')
),
),
div(style = "width: 82vh; border: 1px solid #E8E8E8; border-radius: 5px; padding: 10px; background: #ece9df; margin: 5px 5px 5px 5px; font-size: 12px;",
div(
actionBttn("exitZoom2", NULL, icon = icon('zoom-out', lib = "glyphicon"),
style = "material-circle", size = "xs"),
actionBttn("clearBrush2", NULL, icon = icon('erase', lib = "glyphicon"),
style = "material-circle", size = "xs")
),
div(style = "border: 1px solid white; border-radius: 5px; margin: 0px; width: 80vh; margin-top: 5px;",
plotOutput("map1", width = "auto", height = "auto",
brush = "map1_brush",
hover = hoverOpts(id = "map1_hover")) %>%
withLoader(type = "html")
)
)
),
div(style = "width: calc(100% - 84vh); float: left; margin-left: 5px;",
div(style = "border-left: 3px solid #E8E8E8;",
div(
actionButton("vwStats2", "Stats",icon = icon("stats", lib = "glyphicon"), width = "200px"),
tags$style(HTML("#vwStats2{font-size: 12px; background-color: #ece9df; border-top-right-radius: 30px; padding-top: 5px; border: 1px solid #E8E8E8;
padding-bottom: 5px; font-weight: 550; margin-top: 0; margin-left: -5px;}"))
),
fluidRow(id = "VwStats2", style = "margin: 1px 0 0 10px; border: 1px solid #E8E8E8; border-radius: 3px; display: none;"
),
div(
actionButton("vwLnkData2", "Contact Data", icon = icon("table"), width = "200px"),
tags$style(HTML("#vwLnkData2{font-size: 12px; background-color: #ece9df; border-top-right-radius: 30px; padding-top: 5px; border: 1px solid #E8E8E8;
padding-bottom: 5px; font-weight: 550; margin-top: 5px; margin-left: -5px;}"))
)
),
fluidRow(id = "VwLnkData2", style = "padding: 5px; margin: 0 0 0 10px; border: 1px solid #E8E8E8; border-radius: 3px;",
DTOutput("Subsequent")
)
)
),
div(
actionButton("vwJointMap3", "Intra-scaffold Map",icon = icon("table"), width = "200px"),
tags$style(HTML("#vwJointMap2{font-size: 12px; background-color:#ece9df; border-top-right-radius: 30px; padding-top: 5px; border: 1px solid #E8E8E8;
padding-bottom: 5px; font-weight: 550; margin-top: 5px; margin-left: -5px;}"))
)
),
fluidRow(style = "margin: 0 0 0 10px; border: 1px solid #E8E8E8; border-radius: 5px; padding: 1px; font-family: Tahoma; font-size: 12px;",
div(id = "VwJointMap3", style ="height: calc(100% + 160px); display: none;",
div(style = "width: calc(100% - 270px); float: left;",
div(style = "width: 82vh; border: 1px solid #E8E8E8; border-radius: 5px; padding: 10px; background: #ece9df; margin: 5px 5px 5px 5px; font-size: 12px;",
fluidRow( style = "margin: 0;",
div( style = "float: left;",
dropdownButton(
circle = TRUE, status = "default", size = "sm",
icon = icon("cog", lib = "glyphicon"), width = "300px",
tooltip = tooltipOptions(title = "Click to edit plot")
)
)
)
# fluidRow(style = "border: 1px solid white; border-radius: 5px; margin: 0px; width: 80vh;"
# plotOutput("map2", width = "auto", height = "auto", hover = hoverOpts(id = "map2_hover")) %>%
# withLoader(type="html")
# )
#uiOutput("map2_hoverinfo")
)
)
)
)
)
)
)
)
)
)
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