mash_plot_Ulist: ggplot of specific covariance matrix patterns

In Alice-MacQueen/snpdiver: Explore SNP Effects on Multiple Phenotypes in Diversity Panels

Description

Creates a tile plot using ggplot of the covariance matrices specified in the mash model.

Usage

mash_plot_Ulist(
  m,
  range = NA,
  saveoutput = FALSE,
  suffix = "",
  limits = TRUE,
  labels = TRUE
)

Arguments

m	An object of type mash
range	Numeric vector. Which covariance matrices should be plotted?
saveoutput	Logical. Should the output be saved to the path?
suffix	Character. Optional. A unique suffix used to save the files, instead of the current date & time.
limits	Logical. Should there be plot limits of -1 and 1? Default is TRUE.
labels	Logical. Should each pairwise comparison proportion have a label? Default is TRUE.

Value

A list of dataframes used to make the tile plots and the plots themselves.

Alice-MacQueen/snpdiver documentation built on Dec. 17, 2021, 8:41 a.m.