AlineTalhouk/FluidigmValidation: VALIDATE FLUIDIGM MACHINE DATA

It has functionalities to parse and filter fluidigm data based on user-defined freuqncy, depth, and quality thresholds. It can also label tumor type for each row as T1, T2, or N based on file name. Mutation type (i.e. somatic, germline, normal, artifact) are also labeled. It can also tell if a data file has enough useful data based on user-inputs. Users can create their own script or functions using existing functions and procedures contained in the package.

Getting started

Package details

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Installation Install the latest version of this package by entering the following in R:
AlineTalhouk/FluidigmValidation documentation built on May 5, 2019, 4:54 a.m.