Man pages for AlineTalhouk/FluidigmValidation
VALIDATE FLUIDIGM MACHINE DATA

checkAllFilesTitle function to check if files in user-input directory are...
checkFCTitle function to check FC
filterPassDepthTitle function to subset data that has passed filter and...
filterQualityFrequencyTitle function to filter quality and frequency for...
fluidigmValidationMainTitle main function for processing fluidigm data files
getPatientIDTitle function to obtain patient ID from file name
labelMutationGroupTitle function for labelling mutation group
labelTumorTypeTitle function to label tumor type based on file name
notMutationGroupExceptionTitle function to check if a chunk is an mutation group...
onceNTitle function to check if a vector only has 1 "N"
onceT1Title function to check if a vector has only 1 T1
onceT2Title function to check if a vector has only 1 T2
onlyRepetitivePosTitle function for finding only data rows whose positions are...
organizeTitle function to create a folder for each patient and move...
passSummaryTitle function to summarize raw genome files by taking only...
processAmpliconInfoTitle function to perform amplicon information
renameToTxtTitle function to rename vcf files to txt files in not using...
splitINFOTitle function to split INFO column in fluidigm data
twiceT1Title function to check if a vector has only 2 T1
twiceT2Title function to check if a vector has only 2 T2
AlineTalhouk/FluidigmValidation documentation built on May 5, 2019, 4:54 a.m.