Provides quality control (QC), normalization, and batch effect correction operations for 'NanoString nCounter' data, Talhouk et al. (2016) <doi:10.1371/journal.pone.0153844>. Various metrics are used to determine which samples passed or failed QC. Gene expression should first be normalized to housekeeping genes, before a reference-based approach is used to adjust for batch effects. Raw NanoString data can be imported in the form of Reporter Code Count (RCC) files.
Package details |
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Maintainer | |
License | MIT + file LICENSE |
Version | 0.4.2 |
URL | https://github.com/TalhoukLab/nanostringr/ https://talhouklab.github.io/nanostringr/ |
Package repository | View on GitHub |
Installation |
Install the latest version of this package by entering the following in R:
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