Man pages for AllenInstitute/cocoframer
COmmon COordinate FRAMEwork in R
| aibs_dims | Dimensions for AIBS CCF data at different resolutions |
| aibs_organism_id | Organism ID used by the AIBS API |
| ccf_2017_color | Retrieve a set of CCF 2017 colors |
| ccf_2017_mesh | Retrieve a CCF 2017 mesh from the cocoframer package |
| cleanup_taxons | Clean up taxons by removing structures no longer present... |
| compute_hierarchical | Compute values hierarchicaly over a flat ontology |
| filter_mba_ontology_children | Filter the MBA ontology to find children of a given structure... |
| flatten_mba_ontology | Convert a nested Mouse Brain Atlas ontology to a data.frame |
| generate_mba_taxons | Generate a taxon column that shows the "lineage" of each... |
| generate_taxons | Generate a taxons column for a flattened ontology |
| get_aba_ish_data | Retrieve gridded ABA RNA ISH results for a specific... |
| get_aba_ish_structure_data | Get per-structure ABA RNA ISH results for a specific... |
| get_ccf_annotation | Download the CCF Annotation object and return a 3D Array of... |
| get_ccf_grid_annotation | Download the CCF Grid Annotation object and return a 3D Array... |
| get_exp_gene_relationships | Query the ABA API to get relationships between ISH... |
| get_gene_aba_ish_ids | Find ABA RNA ISH experiment IDs for a specific gene symbol |
| get_mba_ontology | Download the Mouse Brain Atlas ontology as a list object |
| mba_structure_id | Get the Mouse Brain Atlas numeric structure ID(s) for given... |
| obj_to_mesh | Read a .obj file to get a rgl-compatible mesh object |
| plot_ccf_meshes | Plot 3D structures from the CCF |
| plot_ccf_structure_points | Plot a 3D CCF structure specified by its structure ID as... |
| read_aibs_nrrd | Read AIBS .nrrd files |
| read_rgl_mesh_zip | Read a mesh object from a zip file generated by... |
| save_rgl_mesh_zip | Save a mesh object to a zip file for later use |
| slice_ccf_arr | Slice a 3D CCF array to get a 2D matrix |
