get_aba_ish_structure_data: Get per-structure ABA RNA ISH results for a specific...

In AllenInstitute/cocoframer: COmmon COordinate FRAMEwork in R

Description

Get per-structure ABA RNA ISH results for a specific SectionDataSet

Usage

get_aba_ish_structure_data(api_id, keep_non_atlas = FALSE)

Arguments

api_id	The ID of the SectionDataSet to retrieve
keep_non_atlas	Logical, whether to keep or filter structures without an atlas id value. Default = FALSE.

Value

a data.frame with per-structure atlas expression values:

• name: full name of the atlas structure

• acronym: structure acronym

• atlas_id: atlas id value for structure

• density: normalized expression density value

• energy: normalized expression as intensity/density

• sum_expressing_pixel_intensity

• sum_expressing_pixels

• sum_pixel_intensity

• sum_pixels

• voxel_energy_mean

• voxel_energy_cv

AllenInstitute/cocoframer documentation built on May 21, 2020, 3:09 a.m.