getSubnetwork: Network Graph

In Amy3100/receptor2tfDiffusion: This package calculate single-sample network connectivity

Description

This function generates network graph from receptor to TF by using shortest path with neighboring network nodes.

Usage

getSubnetwork(network, receptors, TFs)

Arguments

network	a dataframe of two columns "from" and "to" with strings representing gene IDs
receptors	receptors in the network node
TFs	transcription factors in the network node

Value

list of two components: network subgraph from receptor i.e. start node to TF i.e. end node

Examples

# g <- graph_from_data_frame(network, directed = F, vertices = NULL)
#{ ... }

Amy3100/receptor2tfDiffusion documentation built on Dec. 17, 2021, 8:47 a.m.