graph_from_op: Igraph object from OmniPath network
In AnaGalhoz37/wppi: Weighting protein-protein interactions
View source: R/WPPI_functions.R
graph_from_op R Documentation
Igraph object from OmniPath network
Description
Creation of igraph object from PPI OmniPath database with information
regarding proteins and gene symbols.
Usage
graph_from_op(op_data)
Arguments
op_data
Data frame (tibble) of OmniPath PPI interactions from
wppi_omnipath_data.
Value
Igraph PPI graph object with vertices defined by UniProt ID and
Gene Symbol, and edges based on interactions, for all connections in
OmniPath.
See Also
wppi_omnipath_data
Examples
graph_op <- graph_from_op(wppi_omnipath_data())
edges_op <- igraph::E(graph_op)
vertices_op <- igraph::V(graph_op)
AnaGalhoz37/wppi documentation built on Nov. 8, 2022, 7:47 a.m.
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View source: R/WPPI_functions.R
| graph_from_op | R Documentation |
Igraph object from OmniPath network
Description
Creation of igraph object from PPI OmniPath database with information regarding proteins and gene symbols.
Usage
graph_from_op(op_data)
Arguments
op_data |
Data frame (tibble) of OmniPath PPI interactions from
|
Value
Igraph PPI graph object with vertices defined by UniProt ID and Gene Symbol, and edges based on interactions, for all connections in OmniPath.
See Also
wppi_omnipath_data
Examples
graph_op <- graph_from_op(wppi_omnipath_data()) edges_op <- igraph::E(graph_op) vertices_op <- igraph::V(graph_op)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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