View source: R/WPPI_functions.R
in_omnipath | R Documentation |
Check which genes of interest are or not in OmniPath
in_omnipath(graph_op, gene_set, in_network = TRUE)
graph_op |
Igraph object based on OmniPath PPI interactions from
|
gene_set |
Character vector with known-disease specific genes from which is built the functional weighted PPI. |
in_network |
Logical: whether to return the genes in the network or the missing ones. |
Character vector with genes corresponding to the query.
wppi_omnipath_data
graph_from_op
# genes mapped and not mapped in OmniPath graph_op <- graph_from_op(wppi_omnipath_data()) genes_interest <- c("ERCC8", "AKT3", "NOL3", "GFI1B", "CDC25A", "TPX2", "SHE") genes_mapped <- in_omnipath(graph_op, genes_interest, 1) genes_notmapped <- in_omnipath(graph_op, genes_interest, 0)
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