API for AndersenLab/linkagemapping
Functions for the Mapping of Andersen Lab RIAILs and RILs
| Global functions | |
|---|---|
| AF16xHK104cross | Man page |
| AF16xHK104markers | Man page |
| AllCBfosmids | Man page |
| AllCBfosmids_pacbio | Man page |
| AllN2fosmids | Man page |
| FindRIAILsforNILs | Man page Source code |
| N2xCB4856cross | Man page |
| N2xCB4856cross_full | Man page |
| N2xCB4856markers | Man page |
| N2xLSJ2cross | Man page |
| N2xLSJ2markers | Man page |
| RIAILgenotypes | Man page |
| RIAILmarkerconversion | Man page |
| annotate_lods | Man page Source code |
| calc_mediation | Man page Source code |
| checkeQTLintervals | Man page |
| cint | Source code |
| count_strains_per_trait | Man page Source code |
| eQTLpeaks | Man page |
| effectplot | Man page |
| eqtlpheno | Man page |
| extract_genotype | Man page Source code |
| extract_scaled_phenotype | Man page Source code |
| findCBfosmids | Man page Source code |
| findN2fosmids | Man page Source code |
| findindels | Man page Source code |
| fsearch | Man page Source code |
| get_lod_by_cor | Source code |
| get_peak_fdr | Source code |
| get_peak_gwer | Source code |
| get_peaks_above_thresh | Source code |
| get_pheno_resids | Source code |
| indels | Man page |
| load_cross_obj | Man page Source code |
| lodmatrix2scanone | Source code |
| lodplot | Man page Source code |
| map | Source code |
| mapformat | Man page Source code |
| maxlodplot | Man page Source code |
| maxpeaks | Source code |
| mergepheno | Man page Source code |
| probe_info | Man page |
| pxgplot | Man page Source code |
| pxgplot_par | Man page |
