N2xLSJ2cross: Cross object for N2xLSJ2 RIAILs
In AndersenLab/linkagemapping: Functions for the Mapping of Andersen Lab RIAILs and RILs
Description
In this object, N2 genotypes are encoded as 1 and LSJ2 genotypes are
encoded as 3. This cross object had heterozyous loci removed (set to NA). If
heterozygous loci are introduced back into the data, they should be encoded
as 2. When the extract genotype function is run on this cross object, N2
genotypes are converted to -1 and LSJ2 genotypes to 1. If heterozygous loci
are introduced back into the data, they will be extracted as the value 0. For
mappings with this cross object, negative effect sizes indicate that N2 had
the greater phenotype value while postive effect sizes indicate that LSJ2 had
a greater phenotype value.
Format
A cross object made with the qtl package, with genotype and
phenotype subobjects.
AndersenLab/linkagemapping documentation built on Jan. 27, 2022, 10:44 p.m.
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Description
In this object, N2 genotypes are encoded as 1 and LSJ2 genotypes are encoded as 3. This cross object had heterozyous loci removed (set to NA). If heterozygous loci are introduced back into the data, they should be encoded as 2. When the extract genotype function is run on this cross object, N2 genotypes are converted to -1 and LSJ2 genotypes to 1. If heterozygous loci are introduced back into the data, they will be extracted as the value 0. For mappings with this cross object, negative effect sizes indicate that N2 had the greater phenotype value while postive effect sizes indicate that LSJ2 had a greater phenotype value.
Format
A cross object made with the qtl package, with genotype and
phenotype subobjects.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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