N2xCB4856cross_full: Whole genome cross object for N2xCB4856 RIAILs

In AndersenLab/linkagemapping: Functions for the Mapping of Andersen Lab RIAILs and RILs

Description

Must be loaded with load_cross_obj("N2xCB4856cross_full") This cross object was created with whole-genome sequence data. Any position with a breakpoint in any of the RIAIL sets (set 1 = QX1-239, set 2 = QX240-598, set 3 = ECA1-667) is denoted as a marker. In this object, N2 genotypes are encoded as 1 and CB4856 genotypes are encoded as 2. This cross object contains no heterozyous loci. When the extract genotype function is run on this cross object, N2 genotypes are converted to -1 and CB4856 genotypes to 1. For mappings with this cross object, negative effect sizes indicate that N2 had the greater phenotype value while postive effect sizes indicate that CB4856 had a greater phenotype value.

Format

A cross object made with the qtl package, with genotype and phenotype subobjects.

AndersenLab/linkagemapping documentation built on Jan. 27, 2022, 10:44 p.m.