meta2d_wrapper: meta2d_wrapper

In AndreaRP/CircaN: Identification Of Circadian Patterns In Omics Data

Description

Wraps the meta 2d method with JTK + LS and returns a data frame with the results. The period is set between 20 and 28h.

Usage

meta2d_wrapper(
  data,
  timepoints,
  min_per = 20,
  max_per = 28,
  cycMethod = c("LS", "JTK")
)

Arguments

data	The data matrix with the omics data.
timepoints	numeric vector containing the timepoints corresponding to each column in data.
cycMethod	a character vector(length 1 or 2 or 3). User-defined methods for detecting rhythmic signals, must be selected as any one, any two or all three methods(default) from "ARS"(ARSER), "JTK"(JTK_CYCLE) and "LS"(Lomb-Scargle).

Examples

meta2d_results <- meta2d_wrapper(my_data, s2c$time)

AndreaRP/CircaN documentation built on Jan. 25, 2021, 5:49 a.m.