Files in AndrewC160/ROMOPOmics
ROMOPOmics: incorporating 'Omics Data Into The Observational Medical Outcomes Partnership (OMOP) Data Model
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/buildSQLDBR.R
R/check_geo_by_url.R
R/combineInputTables.R
R/composite_geo_table.R
R/expand_and_tpose.R
R/fetch_geo_datasets.R
R/fetch_geo_series.R
R/getDBTables.R
R/getDependencies.R
R/interpret_class.R
R/loadDataModel.R
R/loadModelMasks.R
R/load_data_dir.R
R/metadata_mask.R
R/parse_gds_coldata.R
R/parse_geo_metadata.R
R/parse_geo_text_results.R
R/parse_gse_metadata.R
R/parse_metadata.R
R/readInputFile.R
R/read_data.R
R/truncate_by_chars.R
README.Rmd
README.md
ROMOPOmics.Rproj
inst/extdata/GSE60682_standard.csv
inst/extdata/GSE60682_standard_mask.csv
inst/extdata/Nof1.csv
inst/extdata/Nof1_mask.csv
inst/extdata/OMOP_CDM_v6_0.csv
inst/extdata/OMOP_CDM_v6_0_custom.csv
inst/extdata/brca_clinical.csv
inst/extdata/brca_clinical_mask.csv
inst/extdata/brca_mutation.csv
inst/extdata/brca_mutation_mask.csv
inst/extdata/ds_ids_kidney_sequencing.txt
inst/extdata/ds_seeds.txt
man/buildSQLDBR.Rd
man/check_geo_by_url.Rd
man/combineInputTables.Rd
man/composite_geo_table.Rd
man/expand_and_tpose.Rd
man/expand_entry_columns.Rd
man/fetch_geo_datasets.Rd
man/fetch_geo_series.Rd
man/figures/geo_import_datasets.png
man/figures/geo_import_series.png
man/figures/patient_to_observation_centric.PNG
man/figures/romopomics_2.0.PNG
man/figures/romopomics_code_flow.png
man/getDBTables.Rd
man/getDependencies.Rd
man/interpret_class.Rd
man/loadDataModel.Rd
man/loadModelMasks.Rd
man/load_data_dir.Rd
man/load_mask_dir.Rd
man/metadata_mask.Rd
man/parse_gds_coldata.Rd
man/parse_geo_metadata.Rd
man/parse_geo_text_results.Rd
man/parse_gse_metadata.Rd
man/parse_metadata.Rd
man/readInputFile.Rd
man/read_data.Rd
man/read_mask.Rd
man/transpose_to_colwise.Rd
man/truncate_by_chars.Rd
tests/testthat.R
tests/testthat/test-loadDataModel.R
vignettes/ATACseq.Rmd
vignettes/Downloading_Processing_TCGA.Rmd
vignettes/GEOquery_interface.Rmd
vignettes/Nof1.Rmd
vignettes/ROMOPomics.Rmd
