parse_geo_text_results: parse_geo_text_results
In AndrewC160/ROMOPOmics: ROMOPOmics: incorporating 'Omics Data Into The Observational Medical Outcomes Partnership (OMOP) Data Model
View source: R/parse_geo_text_results.R
Description
Search results from GEO can be downloaded in text form, and this function
parses these into a table. More for convinience than anything, this could be
useful if users want to incorporate search results they've generated on the
GEO website. To use, select the "text" option for the download and save to
a text file, then point this function at that file.
Usage
1
2
3
parse_geo_text_results(
text_file = file.path(data_dir, "ds_ids_kidney_seqencing.txt")
)
Arguments
text_file
Text file location containing the "text" format of the GEO browser's results.
AndrewC160/ROMOPOmics documentation built on Jan. 27, 2021, 6:57 p.m.
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View source: R/parse_geo_text_results.R
Description
Search results from GEO can be downloaded in text form, and this function parses these into a table. More for convinience than anything, this could be useful if users want to incorporate search results they've generated on the GEO website. To use, select the "text" option for the download and save to a text file, then point this function at that file.
Usage
1 2 3 | parse_geo_text_results(
text_file = file.path(data_dir, "ds_ids_kidney_seqencing.txt")
)
|
Arguments
text_file |
Text file location containing the "text" format of the GEO browser's results. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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